Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023700.1 Length=34553 Score E Sequences producing significant alignments: (Bits) Value seq5177 428 1e-115 seq9743 154 3e-33 seq8746 125 2e-24 seq15223 104 5e-18 seq1016 98.7 2e-16 seq8907 87.8 4e-13 >seq5177 Length=8671 Score = 428 bits (474), Expect = 1e-115 Identities = 907/1340 (68%), Gaps = 35/1340 (3%) Strand=Plus/Minus Query 17753 GACCGCAACACCCCGCTCCAGGACGCCGAGGTCATCGGCGTGCCGGTAGCGGCCAACGTC 17812 || ||||| || || | ||||| ||||||| | | || || || || || |||||| Sbjct 4761 GATCGCAATACGCCAATGAAGGACACCGAGGTGCTGGTGGTTCCTGTCGCCGCTAACGTC 4702 Query 17813 CAGGTCTTCGCCGGCGCCATCGTCGTGGCGAACGCTACCGGGTTCGCCGTGGGCGGCAGC 17872 | ||||||| ||| || | | || || | ||| || || || || | ||| Sbjct 4701 CGCATCTTCGCGGGCTCCCTGGCGGTTGCCACCGCCACTGGCTTTGCTGCACCCGGTTCA 4642 Query 17873 ACCGCCACCGGCCTGACCTACCTGGGCCGCGCTGAGGAATACGTGGACAACCGCAATGGC 17932 |||||| ||| || ||||||||||||| |||| || || |||||||| ||| Sbjct 4641 ACCGCCCTGGGCTTGTCCTACCTGGGCCGTTTCGAGGCATCAGTCGACAACCGAGGGGGC 4582 Query 17933 GCGGATGGCGC---CAAGGTCGTCCGTG-TGCGCCGCCTGAACGCCTTCAAGTGGGCGAA 17988 || | ||| || | ||| ||| | | |||| || || ||| ||||| || Sbjct 4581 GCCGCTGGTGCTGCCCAGG----CCGAGATCCGCCATGGCAAGGCATTCCTTTGGGCCAA 4526 Query 17989 CGACGGCAGCGTCACCCAGGCGCACCTGATGAAACCCGCCTACATCGTGGACGACCAGAC 18048 ||||| | | |||| |||||||||||| | || || ||||||||||| || ||| | || Sbjct 4525 TGACGGAACCATCACTCAGGCGCACCTGTTCAAGCCAGCCTACATCGTTGATGACGAAAC 4466 Query 18049 CGTCGCCGCCACGGACGGCACCGAAACCCGCTCCCCGGCCGGCCGCATCATCGGCGTCGA 18108 |||||| || | || | || ||||| ||| | ||||| |||||| |||| | || Sbjct 4465 CGTCGCGGCTGCTGATGCAGGCGGCACCCGATCCGCTGCCGGACGCATCGTCGGTATTGA 4406 Query 18109 ACCGGACGGCGTGTGGGTGGAATAACAGGCTCACCAAC--GGAGAACCGGACACATGCTG 18166 | ||||||| ||||| || |||| ||| | |||| | | |||| || Sbjct 4405 TACCAACGGCGTTTGGGTTGAGTAACTCCCTCTATATATAGGAGCGCATTGCGCATGTTG 4346 Query 18167 ATCAACAAGCAGAGTCTCAACGCGGCATTCGTCGCGATCAAAACCATCTTCAACAACGCC 18226 | |||||| | | | || || ||||| || | |||||| | ||||| |||||| Sbjct 4345 GTTAACAAGTCCTCTATTCAGGCAGCTTTCGTTGCTCTGAAAACCCTTTTCAATAACGCC 4286 Query 18227 TTCGCGGCGGCCCCCACCACCTGGCAGAAGATCGCCATGGAAGTGCCGAGCAACACCAGC 18286 || | | | || |||| | | ||| | |||||||||||| | ||||| |||| ||| || Sbjct 4285 TTTGGGTCTGCACCCAGCTCTTGGGAAAAGATCGCCATGAAGGTGCCAAGCACCACTGGC 4226 Query 18287 AGCAACGATTACAAGTGGTTGAGCACCTTTCCGAAGATGCGCCGCTGGATCGGCGCGAAG 18346 |||||| || ||| || | ||||||||||||||||| ||| | || ||||| Sbjct 4225 AGCAACATGTATGCCTGGCTGTCGGCGTTTCCGAAGATGCGCCGTTGGGTTGGTGCGAAA 4166 Query 18347 GTGGTCAAGAACCTGAAAGCCTACAAGTACGTTGTCGAGAACGAGGACTTCGAGGCCACC 18406 || |||||||| ||||| | || ||| || || ||||| ||||| || || || Sbjct 4165 CACGTTAAGAACCTCAAAGCGTTCAGCTACACCGTGGAAAACGAAGACTTTGAAGCGACT 4106 Query 18407 GTCGAGGTGGACCGCAACGACATCGAGGACGACCAAATCGGCATCTACTCGCCCCAGGCG 18466 ||||| || ||||| ||| ||||||| ||||| || | ||||| || ||||||||||| Sbjct 4105 GTCGAAGTAGACCGTAACCACATCGAAGACGATCAGTTGGGCATTTATGCGCCCCAGGCG 4046 Query 18467 AAGATGGCCGGTTACTCGGCGGCTCAGCTCCCGGACGAGCTGGTCTATGAAGCGGTCAAC 18526 ||||||| || | ||||| | | | ||||| || | || | || ||| ||| Sbjct 4045 CAGATGGCTGGCTTTTCGGCAAAGCGGTTGCCGGATGAAATCGTATTCGAGCTGGTGAAC 3986 Query 18527 GGCGCCTTCACCAAGCCCTGTTTCGACGGCCAGTATTTCATCGACACGGATCACCCTGTC 18586 || | ||| ||| | || | |||||| ||||||||| | || || || || ||| Sbjct 3985 GGTGGCTTTGGCAACCTGTGCTACGACGGTCAGTATTTCTTTGATACAGACCATGTCGTC 3926 Query 18587 GGTGATGCCTCGGTGAGCAACAAGGGCACCGCTCCGCTTTCCAACGCCAGCCAGGCGGCG 18646 ||| || | || |||||||| ||||| || | || |||| | | | |||||| || Sbjct 3925 GGTAGTGGCAGCGTCAGCAACAAAGGCACTGCGGCACTCTCCATCACGACCCAGGCAGCA 3866 Query 18647 GCGAAGGCAGGTTATGGCGCTGCTCGCACTGCGATGAAGAAGTTCAAAGACGAGGAAGGA 18706 || ||||| |||||||||| || || || || ||| |||||||| ||||| || || Sbjct 3865 GCCAAGGCCAGTTATGGCGCGGCACGTACCGCCATGGGCAAGTTCAAGGACGATGACGGC 3806 Query 18707 CGTTCCCTCAACGTCTCCCCCAAC-GTGCTCCTGGTCGGCCCGGCGCTGGAAGACGTGGC 18765 || | || | || | ||||| | ||||||||||| || | ||||||||| || Sbjct 3805 CGCCCGCTGGATGT-GCGTCCAACAATCCTCCTGGTCGGGCCTGGCCTGGAAGACACCGC 3747 Query 18766 GAAGATGCTGCTCACCAACCCGAAGCTCGC--GGACAACACCCCG---AACCCCTACGTC 18820 | || || ||| | | |||| ||| || | | |||| |||| Sbjct 3746 ----ACGCGCCTTGTTGACCAG-TGATCGCCTGGAAGACGGCAAGGTCAACCTCTACAAG 3692 Query 18821 GGCACTGCTGAGCTGGTAG--TGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGC 18878 ||||| || |||||||| | | ||| || ||| |||||||| |||||||| || | Sbjct 3691 GGCACCGCCGAGCTGGTTGTCTCGAC--TCGCATCACTTCCGACACGGCCTGGTTTCTTC 3634 Query 18879 TGGACACCACCAAGCCGGTAAAACCGTTCATCTTCCAGCCCAGGAAACAGCCGGAATTCG 18938 ||||||||| |||||| || || ||||||| ||| | ||| |||| |||| Sbjct 3633 TGGACACCAGCAAGCCCGTGCGCCCCTTCATCTATCAGGAGCGCAAAGCCCCGGTCTTCG 3574 Query 18939 TTTCCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAG---CTGAAGTTCG 18995 | ||| | ||| || | ||||| ||||||| | |||||| | ||||||| Sbjct 3573 TCCAGCAGACCGACCCCGAAGCTGATGATGTCTTCAGC---CGCAAGAAATTCAAGTTCG 3517 Query 18996 GCGCCGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCG 19055 | || ||||| || || |||| ||||| || |||||||| ||||| | ||||| || | Sbjct 3516 GGGCAGAAGCGCGAGCGGCTGGTGGTTATGGTTTCTGGCAACTGGCTTTCGGCTCGACTG 3457 Query 19056 GCACTGGCGCATAAGGGGGC 19075 || | || ||||||||| Sbjct 3456 GC---GAAGCGTAAGGGGGC 3440 >seq9743 Length=5680 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 23292 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 23351 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 1048 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 989 Query 23352 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 23410 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 988 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 930 Query 23411 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 23452 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 929 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 888 Score = 91.5 bits (100), Expect = 3e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24239 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 24298 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 167 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 108 Query 24299 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 24358 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 107 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 48 Query 24359 AACATGGTCAAGGCGCAGAAGAAGGCCGAC 24388 ||||||||||||||||| |||||||| Sbjct 47 GGGATGGTCAAGGCGCAGAAAGAGGCCGAC 18 >seq8746 Length=2069 Score = 125 bits (138), Expect = 2e-24 Identities = 121/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 6188 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 6247 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 1750 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 1692 Query 6248 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 6305 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 1691 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 1634 Query 6306 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 6337 | || || |||| || ||||| ||||||| Sbjct 1633 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 89.7 bits (98), Expect = 1e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 6587 ATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCT 6646 ||||||||||||||| | || || |||| || || ||||| || || ||| ||| Sbjct 1370 ATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGC 1311 Query 6647 CGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTG 6706 ||||| ||||| ||||| |||||||| ||| | ||| |||||||||| | |||||| Sbjct 1310 CGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTG 1251 Query 6707 GTCGAACTCCAGCGCCTGGGCTGG 6730 | ||| | ||| |||||||| Sbjct 1250 GCCGAGTTTGCCCGCTTGGGCTGG 1227 >seq15223 Length=1953 Score = 104 bits (114), Expect = 5e-18 Identities = 252/377 (67%), Gaps = 10/377 (3%) Strand=Plus/Minus Query 24578 GACCGATTCGCGCAGCAGCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGC 24637 ||||| || || |||||| ||||| |||| | |||| | ||| ||||| | Sbjct 1830 GACCGGTTTGCTCAGCAGTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAAC 1771 Query 24638 ATGAGCCTCGACGAGTACAA-CGACAAGCTCAAGGCGCTGGAAG---CGAACCATGCCGC 24693 ||| || |||| ||| ||| || | || |||||| | || ||||| | ||||| Sbjct 1770 ATGTCGGAGGAGGAGTTCAAGCGAAAATCCCA-GGCGCTTGCAGATGCGAACAAGGCCGC 1712 Query 24694 GA-TGACCCAGCAGCTGCAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGG 24752 | ||||| || | | | ||||| || || | || ||| |||||| ||||| Sbjct 1711 CACTGACC----AGATCCGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGA 1656 Query 24753 TCAACGGGGCGACGTCGGCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCC 24812 || || ||||||||||| | || ||||| | || || || | ||||| ||| |||| Sbjct 1655 CGAAGGGCGCGACGTCGGCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCC 1596 Query 24813 AGACCTACGAACTGTTTAGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCG 24872 ||||| | ||||| | || |||||| | | ||||||| || || || || |||| Sbjct 1595 AGACCAAAAGCCTGTTCGGCAATGCCTTCAGCAGCATGGAGGACGCGGTAGTCAACTTCG 1536 Query 24873 TGATGACTGGCAAGGCGTCGCTGGATGACTTCGTCCGCACCATGATTGGCGACGTGGCCA 24932 ||||| |||||||| ||| | ||||||| | || ||| ||| ||||| Sbjct 1535 CAATGACCGGCAAGGCATCGTTCTCGGACTTCGCTAAATCGATCCTTGCAGACATGGCCC 1476 Query 24933 GGATGGCGACCCGCCAG 24949 | || || ||||||||| Sbjct 1475 GCATTGCTACCCGCCAG 1459 >seq1016 Length=5115 Score = 98.7 bits (108), Expect = 2e-16 Identities = 169/241 (70%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 8275 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 8332 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 1150 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 1206 Query 8333 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 8392 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 1207 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 1266 Query 8393 CGCGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCTA 8449 || | ||||||||||| ||||||| ||||||||||||| |||| |||||| | Sbjct 1267 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 1323 Query 8450 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 8509 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 1324 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 1383 Query 8510 C 8510 | Sbjct 1384 C 1384 >seq8907 Length=1284 Score = 87.8 bits (96), Expect = 4e-13 Identities = 263/399 (66%), Gaps = 14/399 (4%) Strand=Plus/Plus Query 2261 ATCCTGGGTGAAATGGGCATCAAGCCGGCCGGGACCATCCCGGAAATGGCCGACCAGATC 2320 ||||| | || ||| ||||| | |||||| |||||| ||| |||| |||||||||| Sbjct 336 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 395 Query 2321 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 2380 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 396 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 455 Query 2381 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 2434 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 456 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 509 Query 2435 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTCAAGAAGTACGAACGCTTCCAT 2494 || | ||||||||||| ||| |||| | || |||| |||||| | ||| Sbjct 510 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 569 Query 2495 GGCCGCGTTCTCAGCTGGGTTCCGGCCCAGCCAGTGTCCCTGGAGGACGCCCGCAACCTG 2554 ||| || || ||||| || || |||| | ||||||| || ||| |||| Sbjct 570 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 629 Query 2555 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGATTTGCTCGCGCACCTGGTGAA 2613 || | ||| | |||||| | || ||||||| |||||||| | ||||| || Sbjct 630 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 688 Query 2614 GAAGTCCCTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 2652 |||| |||| | ||||| || ||||| ||||| Sbjct 689 GAAGGTGAATGGCTGCCTGCGTCGTGTAGCGGTCAACCT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110410978313610