Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq3869 246 3e-60 >seq3869 Length=8584 Score = 246 bits (272), Expect = 3e-60 Identities = 265/351 (75%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 121985 GATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTACGA 122044 ||||||||| || ||| ||| |||||| | |||||||||||||||||| |||||||| Sbjct 2572 GATGTCGTCGAACACGGTCGCCGGGTCGTTGACGATGTTGCGGATGATGTGAGTGTACGA 2631 Query 122045 ACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGTGTC 122104 ||| |||||||| ||||| ||| ||||| || || ||||| || ||||| | | Sbjct 2632 ACGCGAGTGAATGGTCTCGGAGAAGGCCCAGGTTTCTACCCAGGTCTCCAGCTCCGGGAT 2691 Query 122105 GGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGAT 122164 ||| | | |||||| | | | ||||||| ||||||||| | ||||| || || | Sbjct 2692 GGAGATCAGCGGCAGCAACGCCACATTCGGGCTACGGCCCTGGATGGAGTCGAGCAGCGT 2751 Query 122165 CTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATGTAGTC 122224 ||| |||||||||||||||||||| || || || || || ||||| || | |||||| Sbjct 2752 CTGGTACTTCAGGTTGCTGATGAAAATATGTTTTTCATGTTCCGGCAGCGCCTGGTAGTC 2811 Query 122225 AATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTTTTC 122284 || || || |||| |||| ||||||||||| ||||||||||| | || |||||||| Sbjct 2812 GATGCGATCGCGGGAAACGTCAACCTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTC 2871 Query 122285 GATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTT 122335 ||||||||||| || | ||| ||||||||| || || || | ||||| Sbjct 2872 AATCAGCTTTTCAAAGATGTCGTATTTTTGCTGATCGTAGCGGGCCACGTT 2922 Score = 188 bits (208), Expect = 7e-43 Identities = 647/994 (65%), Gaps = 46/994 (5%) Strand=Plus/Plus Query 123182 CCACGCTTCGCCAAGTAATACGCCAGGTTGGTCCAGCCAATACCCAGCGTTCGACGATCC 123241 ||| ||||||||| || || || | |||| || ||| ||||||||||| ||||| || Sbjct 3799 CCATGCTTCGCCAGATAGTAAGCGAAGTTGATCACGCCGATACCCAGCGTACGACGCCCC 3858 Query 123242 TTAGT--CTTCTCT-GCCGCCAGTACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGT 123298 | | | | | |||||| | | ||||| | ||| ||||| | ||| || || Sbjct 3859 ATCGCGCCGCGTTTAGCCGCCGGGATGGGGTAATCCTGATAGTCGAGCAGCGCATCCAGA 3918 Query 123299 GAGCGCACCAAGGTGCGTACCGGGCCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGG 123358 | |||||| | || | | || || || || || || | |||||| Sbjct 3919 GCACGCACCGCCAGCACTGCCAGCTCTTCCAGCTCGTCGAGGCTGTCGATAGCCCCGAGG 3978 Query 123359 TTGATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCA 123418 |||| || ||||| || || || || || ||||| | || || |||| || Sbjct 3979 TTGAAGGCCGACAGGGTGCACAGCGCGATTTCGCCGTTTTCGTCG------TTGACATCT 4032 Query 123419 TTGATCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCC 123478 | | || | || ||||| |||||||||| ||||||||| ||||| ||||||||| Sbjct 4033 TCCAGCGGTTTGGTCGGCAGAGCAATCTCCAGGCACAGGTTAGACTGACGCACCGGGGCG 4092 Query 123479 AGTTCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGT 123538 | | | |||| ||||||||||| ||||||||||||||| |||| ||| || |||||||| Sbjct 4093 ACTACCGGATCGAACGGGCTGTGGGTGTTGCAGTGGTCGACGTTCTGGATATAGATGCGG 4152 Query 123539 CCTGTCTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGAGATGCTTTTC 123598 || || |||||||||||| || ||||| || | || || | | | Sbjct 4153 CCGGTAGAGGCGCGCTCCTGCATCATCAGCGAGAACAGCTCAACGGCTTTAATACGCTGC 4212 Query 123599 TTAGCCACTTCCG--GATCGGCTTCCAACTTCTCGTACAACTCTTCAAATTTCTTCTGGT 123656 ||| | | | | | | | || || ||| ||||| ||||| | | ||| | Sbjct 4213 TTA-CGAATGCTGTCGTCCTGC-TCGTACTGGGTGTACAGGCGCTCAAACTCGTCCTGAT 4270 Query 123657 CGGAGAAGAAATACTCGTACAGCTTGCCACCTGCAACGTTCGGGTGGAACAGAGTGATAT 123716 ||| |||||| || ||||| ||| | || ||| |||||| || |||| Sbjct 4271 CGGCGAAGAAGGCGTCATACAG---GCCCGGGACGTCGGAAGGGCTGAACAGGGTAATAT 4327 Query 123717 TTCGCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGT 123776 | || | ||||||| | |||| || |||||||| || | |||||||| | || Sbjct 4328 CGCCGCCCTTCAGCAGACGGGTGTACATCAGCTTGTTGATCTGTACCCCGTAGTCCATGT 4387 Query 123777 GACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAAT 123836 ||||| | ||| || || || ||||||||||| |||| ||| | |||| |||| | | Sbjct 4388 GACGAACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTT 4447 Query 123837 CCCAGTGCCACATAGGGTAGAAGTAAGTTGCCGAAGCCTTACGTACACCACCCTG----- 123891 || |||||||| ||||||||| ||||||| | || || || ||||| Sbjct 4448 CCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGC 4507 Query 123892 AGATGTCCACC-----CCAGACCTTCTTGGTAAGAACGGACGATCGGCACAGTTCCTGCG 123946 || | |||| | || | |||| |||||||| || ||| || | | Sbjct 4508 AGGATTTCACCGCGGTCTGGAAATGCTTG--TAGAACGGA--AT--GCA----GCCGGTG 4557 Query 123947 TGTTTCACCTCTCCGCCACGGATTGGTGCGTCCTGACCACGAATCATGCCAAAGTTAAGG 124006 || | || ||||| ||||| || | || | | ||||| || ||| | | Sbjct 4558 TGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCGCGAATGCGCCCGGCGTTGATG 4617 Query 124007 CCGATCCCTGCTCGCTGGGCAGCGTATTT-AC-CTTGCGCCGTCAGT-GCGTTGAAGATC 124063 ||||| || || ||||||| | ||||||| || | |||| | || ||||||| Sbjct 4618 CCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGCTGGAGGTGGCGTTGA----- 4672 Query 124064 TGG--TCGATATCATCGCCGGACTCGATCAATACGCAAGAACTGAACTGTCGTGTCGGAG 124121 ||| || | |||||| ||||||||| ||||| || |||||||| || || || | Sbjct 4673 TGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGAACTGACGGGTTGGGG 4732 Query 124122 TACGAACACCCGCCATGATCGGTGTCGGCAGAGA 124155 |||| || || | ||||||||| |||||||| || Sbjct 4733 TACGCACGCCGGACATGATCGGCGTCGGCAGCGA 4766 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 121690 TCAGCATATACTGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGA 121749 ||||||||| ||| || || | || |||| |||||||| || || || | ||| | Sbjct 2244 TCAGCATATGCTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAA 2303 Query 121750 TGTTGGTATTGCCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCA 121809 | |||| ||||| ||| | || || | || |||||||||||||| ||||| | Sbjct 2304 TTTTGGCGTTGCCTTCCATCAGTTTGCGTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGA 2363 Query 121810 CGTAGAAGCGGATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTACAG 121861 ||||||||||||| ||||| || || || | | ||||||||| || || Sbjct 2364 CGTAGAAGCGGATCGCTTCCAGGGCATTAACGCTCATCAGGCACAGATAGAG 2415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485857310813280