Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq3869 93.3 4e-14 seq4256 86.0 6e-12 seq2048 82.4 7e-11 >seq3869 Length=8584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 281/431 (65%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 31479 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 31538 || || || || |||||||||||||| |||||||||||||| || ||||| || || || Sbjct 4763 CTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTG 4704 Query 31539 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 31598 || ||| | ||| |||| |||| || ||||| || || ||| ||||| | Sbjct 4703 CTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCCACCTCCAGCGCGATTGTGAAA 4644 Query 31599 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGC 31658 || || ||| | ||||| || ||||| | | | || ||||| | | || ||| Sbjct 4643 TACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTGGGCAGC 4584 Query 31659 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCTG 31715 || ||||| || ||| | ||||| ||| |||| ||| | || | | | | Sbjct 4583 CCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTACAAGCATTTCCAG 4524 Query 31716 ACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACTTGCTAT 31775 || | || | || || ||||| || ||||| | || ||||| | ||||| || Sbjct 4523 ACCGCGG---TGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTCTTC 4467 Query 31776 ATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCTT 31835 ||| || |||||| || | || | |||| ||||| |||||||||||| Sbjct 4466 TACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGTACC 4407 Query 31836 GAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTCATGTTCGAA 31895 || | ||||| | || | || ||||| || | ||||||||| | |||| | Sbjct 4406 GACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTGATGTACACC 4347 Query 31896 CGTCTGGTGAA 31906 |||||| |||| Sbjct 4346 CGTCTGCTGAA 4336 >seq4256 Length=25676 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 96730 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCG 96789 || ||| |||||||| | || | ||||| ||||| | |||||||| ||||||| ||| Sbjct 9988 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 10047 Query 96790 CCGTTCTACCGACTGAACTACA 96811 |||||||||||||||||||||| Sbjct 10048 CCGTTCTACCGACTGAACTACA 10069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 96730 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCG 96789 || ||| |||||||| | || | ||||| ||||| | |||||||| ||||||| ||| Sbjct 11918 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 11859 Query 96790 CCGTTCTACCGACTGAACTACA 96811 |||||||||||||||||||||| Sbjct 11858 CCGTTCTACCGACTGAACTACA 11837 >seq2048 Length=13079 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 96734 TTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCGCCGT 96793 || |||||||| | || | ||||| ||||| | |||||||| ||||||| ||||||| Sbjct 4006 TTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGT 4065 Query 96794 TCTACCGACTGAACTACA 96811 |||||||||||||||||| Sbjct 4066 TCTACCGACTGAACTACA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487571905626400