Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq3869 159 4e-34 >seq3869 Length=8584 Score = 159 bits (176), Expect = 4e-34 Identities = 284/412 (69%), Gaps = 2/412 (0%) Strand=Plus/Plus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 ||||||| | |||||| || || ||||| |||| |||||||| |||||| | || | Sbjct 4352 ACATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTAC 4411 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | |||||||||||| || |||| | |||| ||||||| ||||| ||||| ||| | | Sbjct 4412 CACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGA 4471 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 || || || || || || || || || || || |||||||| ||||| |||||||| | Sbjct 4472 GGGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAAT 4531 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 | || |||| ||||| ||| ||||| | |||| ||| | || ||| Sbjct 4532 GCTTGTAGAACGGAATGCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCA 4591 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || || || || || |||||||||||||| || || || | |||| ||| || |||| Sbjct 4592 GCGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAA 4651 Query 140008 TCGATGCT-GCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACAC 140066 ||| ||| | | | ||||||| | || || | ||||||| | || || Sbjct 4652 TCG-CGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAG 4710 Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCA 140118 || ||||| ||||| | || ||||| | || | ||| || || || |||| Sbjct 4711 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCA 4762 Score = 143 bits (158), Expect = 3e-29 Identities = 268/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 137986 CTTCAGCACGTTTCATGATAGCGTCATTCAAGACGATGGTCTCGAATTCTTTTGCTGGAT 138045 |||| ||||||||| ||| || || ||||||| ||||| | | || || | Sbjct 2538 CTTCCGCACGTTTCTGGATCTGCTCGTTGGTGACGATGTCGTCGAACACGGTCGCCGGGT 2597 Query 138046 CAGTGCAAACGTTGCGCATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATG 138105 | || | |||||| |||||||| ||||| ||||| |||||||||||||| ||||| | Sbjct 2598 CGTTGACGATGTTGCGGATGATGTGAGTGTACGAACGCGAGTGAATGGTCTCGGAGAAGG 2657 Query 138106 TCCAAGTCTGAATCCATGTTTCAAG-TCCAACATC-AGAACAGATATCAGCGAATGCGAT 138163 ||| || | | ||| || || || ||| || ||| ||| |||| || || | Sbjct 2658 CCCAGGTTTCTACCCAGGTCTCCAGCTCCGGGATGGAGATCAGCGG-CAGC-AACGCCAC 2715 Query 138164 AGCAGGTGCT-CGTCCTTGAACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGA 138222 | || ||| || || || | || || || || || || || |||| |||| || ||| Sbjct 2716 ATTCGG-GCTACGGCCCTGGATGGAGTCGAGCAGCGTCTGGTACTTCAGGTTGCTGATGA 2774 Query 138223 AAATGCCTTGATCGTTTTCAGACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTA 138282 |||| || || | ||| | || |||| | | | ||||| ||| ||||| | Sbjct 2775 AAATATGTTTTTCATGTTCCGGCAGCGCCTGGTAGTCGATGCGATCGCGGGAAACGTCAA 2834 Query 138283 CTTCTTCTGGACGCCAAAAGAAGGAGAGTTGCTTTTCAGTCAACTTTTCAAATTTTTCGT 138342 | ||||| || ||||| ||||||||||| ||||||||| ||| ||||||||| | |||| Sbjct 2835 CCTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTCAATCAGCTTTTCAAAGATGTCGT 2894 Query 138343 GTTTTGGATCATCGTATCGAGCTACG 138368 |||| | | |||||| || || ||| Sbjct 2895 ATTTTTGCTGATCGTAGCGGGCCACG 2920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534934388467920