Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq501 113 5e-20 seq3869 86.0 7e-12 >seq501 Length=12468 Score = 113 bits (124), Expect = 5e-20 Identities = 79/88 (90%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 83195 TGGTTTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCG 83254 || ||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 4865 TGTTTTATTTGGTGGC--CCCTG-CTGGACTTGAACCAGCGACCAAGCGATTATGAGTCG 4809 Query 83255 ACTGCTCTAACCACTGAGCTACGGGGCC 83282 |||||||||||||||||||| |||||| Sbjct 4808 CCTGCTCTAACCACTGAGCTAAGGGGCC 4781 >seq3869 Length=8584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 267/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 9397 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 9456 || || || || || ||||||||||| || ||||| ||||| ||||||||||| || || Sbjct 4763 CTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTG 4704 Query 9457 TTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 9516 | ||| | || || | |||| || || || ||||| | | || ||| | Sbjct 4703 CTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCCACCTCCAGCGCGATTGTGAAA 4644 Query 9517 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAGC 9576 || |||||| | || || |||||||| || | | ||| ||||| | | || ||| Sbjct 4643 TACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTGGGCAGC 4584 Query 9577 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT--- 9632 || ||||| || ||| |||| || || ||| |||| ||| |||| |||| Sbjct 4583 CCGATCCGCGGCGGCGAAGCCTTCCACACCGG-CTGCATTCCGTTCTACAAGCATTTCCA 4525 Query 9633 GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTA 9692 ||| || |||| || ||||| || ||||| | || || || ||||||| || Sbjct 4524 GAC---CGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTCT- 4469 Query 9693 TGTTCCC-ATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGAT 9751 | | ||| || |||||| || | || | | || || |||||||||||||| Sbjct 4468 TCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGTA 4409 Query 9752 TGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAAC 9798 || | ||||| | || | || ||||| ||| | ||||| ||| Sbjct 4408 CCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAAC 4362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521000106740400