Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq2516 223 4e-53 seq2261 134 1e-26 seq12517 82.4 8e-11 >seq2516 Length=21774 Score = 223 bits (246), Expect = 4e-53 Identities = 159/183 (87%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 62912 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62971 ||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1961 TTACAGGCTTTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGA 1902 Query 62972 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63031 ||| ||||| || || || ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1901 GTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATG 1842 Query 63032 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63091 || ||| || || ||| ||||| |||||||| ||||||||||||||||| ||||| || Sbjct 1841 CTCAACCGCGTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCC 1782 Query 63092 TTC 63094 ||| Sbjct 1781 TTC 1779 >seq2261 Length=3986 Score = 134 bits (148), Expect = 1e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 62911 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 62970 |||||| ||| || |||||||| | ||||| || |||||||||| ||||| | Sbjct 688 ATTACATGGTCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGG 629 Query 62971 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 63030 ||||||| || || || || || ||||||||||||||||||||||||||||||||||| | Sbjct 628 AGTTAAAACGTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGT 569 Query 63031 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 63090 | | || || ||| |||| || || ||||| ||||||||||| ||||||| Sbjct 568 TTTCCATCGCGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCAC 509 Query 63091 CTTCAAT 63097 |||| || Sbjct 508 CTTCGAT 502 >seq12517 Length=681 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 71115 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 71174 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 67 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 126 Query 71175 TAC 71177 ||| Sbjct 127 TAC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538785829055600