Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq2261 134 1e-26 seq2516 98.7 7e-16 >seq2261 Length=3986 Score = 134 bits (148), Expect = 1e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 27340 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27399 ||||||| | |||||| || ||||| ||||||| || | ||| ||||| ||||| | Sbjct 688 ATTACATGGTCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGG 629 Query 27400 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27459 ||||| || || ||||||||||| ||||||||||||| ||| ||||||||||| || | Sbjct 628 AGTTAAAACGTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGT 569 Query 27460 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27519 || | ||| || | ||| || ||| | | || || || || ||||||||||||| Sbjct 568 TTTCCATCGCGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCAC 509 Query 27520 CTTCGAT 27526 ||||||| Sbjct 508 CTTCGAT 502 >seq2516 Length=21774 Score = 98.7 bits (108), Expect = 7e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413 ||||| ||||| || |||||| ||| ||||| | ||||| | || || || || Sbjct 1948 GTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCGTACC 1889 Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27473 |||||||| || ||||| ||||||| ||| ||||||||||| ||||| | ||| ||| Sbjct 1888 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 1829 Query 27474 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGA 27525 | || || || | | ||| || || || ||||||||||| ||||||| Sbjct 1828 AGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGA 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346901419097268