Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq3869 219 4e-52 seq1762 109 5e-19 seq85 87.8 2e-12 >seq3869 Length=8584 Score = 219 bits (242), Expect = 4e-52 Identities = 259/351 (74%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 118889 GATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118948 |||||| || || ||| ||| ||| || | |||||| |||||||| || ||||| || Sbjct 2572 GATGTCGTCGAACACGGTCGCCGGGTCGTTGACGATGTTGCGGATGATGTGAGTGTACGA 2631 Query 118949 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 119008 || ||||| || ||||| ||| ||||| || |||||||| || ||||| | | Sbjct 2632 ACGCGAGTGAATGGTCTCGGAGAAGGCCCAGGTTTCTACCCAGGTCTCCAGCTCCGGGAT 2691 Query 119009 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 119068 ||| | | ||| |||| | | ||||| | ||||||||| | || || || || | Sbjct 2692 GGAGATCAGCGGCAGCAACGCCACATTCGGGCTACGGCCCTGGATGGAGTCGAGCAGCGT 2751 Query 119069 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTC 119128 |||||||||||||||||||||||| || || || || || |||||||| | |||||| Sbjct 2752 CTGGTACTTCAGGTTGCTGATGAAAATATGTTTTTCATGTTCCGGCAGCGCCTGGTAGTC 2811 Query 119129 GATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTC 119188 ||| || || |||| |||| ||| |||||||| ||||||||||| | || ||||| || Sbjct 2812 GATGCGATCGCGGGAAACGTCAACCTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTC 2871 Query 119189 GATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 119239 |||||||| || || || ||| ||| ||||| || ||||| | ||||| Sbjct 2872 AATCAGCTTTTCAAAGATGTCGTATTTTTGCTGATCGTAGCGGGCCACGTT 2922 Score = 143 bits (158), Expect = 3e-29 Identities = 347/519 (67%), Gaps = 11/519 (2%) Strand=Plus/Plus Query 118251 GAATCAACCTGGCCGGACAGATACTGACCGTTCTCGGTTTCCTGCGGTGTTACTTGCACG 118310 ||||| | ||||||| ||||| || | || ||||||||| | || || ||| Sbjct 1904 GAATCGATCTGGCCGACGAGATAAGAACTGACTTCCACTTCCTGCGGCGCCACCTGAACG 1963 Query 118311 TTCCCGGTATTCAGGTGACTGTTGATCCACGGAATCGGGTTCTTGGTCGGCTTACCGATC 118370 || ||| ||| |||||||||| || |||||||| | | || || | Sbjct 1964 TTGTCGGAGACCAGCCAGGTGTTGATCCATGGGATCGGGTTGGAGCGGGTCTG---GAAC 2020 Query 118371 AGTTCACCCAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCC 118430 | | | ||||| ||||| |||| || | ||||||||| |||| ||| | Sbjct 2021 GGCAGATCGAGGCCCACCGCCTGCATGCGGATATTGGTGATGTACTCGACGTACTGGCAG 2080 Query 118431 AGCATACCTTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCT 118490 || ||| |||| ||||||||||||||||| ||||| ||||||| || |||| ||| Sbjct 2081 AGAATATCTTTATTCAGGCCGATCATCGAGCCGTCGCGGAACAGGTAGTCCGCCCACTCT 2140 Query 118491 TTCTCCTGCACCGATGCGTCGATAAAGCCCTGTCGT-GC-CTCTTCGTAGCAATCTTCTG 118548 ||||||||| || || | || | ||| | || ||| | | ||| ||||| | Sbjct 2141 TTCTCCTGCTGCGCCGCCAGCACGAA--CAGGTCATAGCACTCCTGCTTGCACTCTTCGG 2198 Query 118549 CCACACGTGCAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTG 118606 | | || | | || | | ||| | ||| ||| |||||||||| ||| Sbjct 2199 CGATTTCCGCCATTTCCGG--ATCGTCGCTGCCGGAGCGCAGCAGGTTCAGCATATGCTG 2256 Query 118607 AGTTCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACC 118666 || |||| || |||| |||||||| || || ||||| ||||| |||| ||| || Sbjct 2257 GGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTTGGCGTTGCC 2316 Query 118667 CAGCATTACGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGAT 118726 ||| | ||| || | || |||||||||||||||||||| |||||||| ||||| Sbjct 2317 TTCCATCAGTTTGCGTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTAGAAGCGGAT 2376 Query 118727 CGCTTCCAGTGCATTGATGTTGTGCAGACACAGATACAG 118765 ||||||||| ||||| | | | ||| |||||||| || Sbjct 2377 CGCTTCCAGGGCATTAACGCTCATCAGGCACAGATAGAG 2415 Score = 141 bits (156), Expect = 9e-29 Identities = 466/712 (65%), Gaps = 37/712 (5%) Strand=Plus/Plus Query 119928 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 119987 || || ||||||| ||||| |||| ||||| ||||| || |||||| | |||||| Sbjct 3466 CGCGGCGGCTCAATGCCGTTGGTGGCGTTGGAGATCTGCGACGAGGTCTCGGACGGCATC 3525 Query 119988 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATG---TCGATACGCAGCTTT 120044 | | ||| ||||| ||||| ||||| || ||| | ||| ||| |||| | Sbjct 3526 AGTGCGGAGAGCGTTGAGTTGCGCAGGCCGTGAGTTTTAATGGACTCG---CGCAATGCT 3582 Query 120045 TCCCAATCCATCTTCAGT--TCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGT 120102 ||||| || | ||| | ||| || || ||| || | |||||||| || | Sbjct 3583 TCCCAGTCGTAGTGCAGGGGTTCGC--TGACGATGCCGTCCAGATCTTTCTTATAGGTAT 3640 Query 120103 CGATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAATT 120162 |||||||||| |||||||| | || ||||| |||| ||| || || | Sbjct 3641 CGATCGGCAGGATGCCCTGCGCATAGGTGGTTTCGTTGAACCACGGGCAGGCGCCTTGCT 3700 Query 120163 CTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGT 120222 | | ||||| || || || | ||| || || ||||| | ||||| | || || Sbjct 3701 CGATAGCCAGCTCGTTAGAGGCCTTCAGCAGATAGTACTGAATCGCTTCGAACGTTTTGT 3760 Query 120223 GAA-CAGC--GTT--CGCTGCACGAGGGTCGCTGTA---TTTCAGGCCACGCTTCGCCAG 120274 | ||| ||| |||||| |||| ||| ||| |||| |||||||||| Sbjct 3761 GCGTCAGGTTGTTGGCGCTGCC-----GTCGGAGTAGCGTTT---GCCATGCTTCGCCAG 3812 Query 120275 GTAGTATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT--CTTCTCT 120332 ||||| || |||||| || ||| |||||||| ||||| ||| | | | | | Sbjct 3813 ATAGTAAGCGAAGTTGATCACGCCGATACCCAGCGTACGACGCCCCATCGCGCCGCGTTT 3872 Query 120333 -GCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACCAGT-G 120390 |||||| | | || || | |||||| || | ||| ||||| ||||| ||| | Sbjct 3873 AGCCGCCGGGATGGGGTAATCCTGATAGTCGAGCAGCGCATCCAGAGCACGCACCGCCAG 3932 Query 120391 TACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACA 120450 || | ||| ||| || || || || | || | |||||||||| ||| |||| Sbjct 3933 CACTGCCAG-CTCTTCCAGCTCGTCGAGGCTGTCGATAGCCCCGAGGTTGAAGGCCGACA 3991 Query 120451 GAGTACACAGGGCCACTTCCCCCGGGTCGTTCGGGTCATTAATGTCCGTAATCGGATGTG 120510 | || ||||| || | ||| || ||| ||| || | || | ||| | | Sbjct 3992 GGGTGCACAGCGCGATTTCGCC------GTTTTCGTCGTTGACATCTTCCAGCGGTTTGG 4045 Query 120511 TCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGA 120570 ||||||| || || |||| ||||||||| ||||| ||||||||| | | || |||| Sbjct 4046 TCGGCAGAGCAATCTCCAGGCACAGGTTAGACTGACGCACCGGGGCGACTACCGGATCGA 4105 Query 120571 ACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 120622 ||||||| | |||||||||||||| |||| ||| | || || ||||| || Sbjct 4106 ACGGGCTGTGGGTGTTGCAGTGGTCGACGTTCTGGATATAGATGCGGCCGGT 4157 >seq1762 Length=3150 Score = 109 bits (120), Expect = 5e-19 Identities = 232/339 (68%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 111872 CCGCCGTATGGGTCGATGTATTCCCCGGTCTCCAGATCCTTTGCGATCGCATTAATGGTC 111931 |||||||| |||||||| ||| | | ||| || |||| |||| || || | ||| Sbjct 1196 CCGCCGTAGGGGTCGATA-ATTGCGCCGTCGGCA--TCCTGGGCGAGGGCGTTGACCGTC 1252 Query 111932 AAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG-CTGAACATCACCTCGAA 111990 | ||| ||||| || ||| |||||| ||| || || ||| | | | | || | || Sbjct 1253 AGGTCGCGGCGCAGCAGATCGGCTTCGAGGGTGACGTCCGGGGCGGCATAGCAGGTA-AA 1311 Query 111991 ATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGGGCGTACTCTTCCTTGGT 112050 | || || || ||||| | | |||||||| ||||||||||| ||||||||| | | Sbjct 1312 ACCGGTATAGCCCGCGCCGGATTTGCGCTCGGTGCGGGCCAGGGCATACTCTTCCCGGCT 1371 Query 112051 CTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCGAAGCC-GAGTGCCATCA 112109 | ||||| ||| | || || || || || || || | |||| | || | | || Sbjct 1372 TTGCGGATGGAGGAACACGGGAAAATCGCGGCCTACCTGTTGATAGCCCGCGT-CTAGCA 1430 Query 112110 TCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTTGCTCTCAACACCCATCA 112169 ||| || |||||| ||| ||||| || |||| ||||||||| | | || | || Sbjct 1431 TCTGTTGCGGGGTGGCGCCCACCACCACCCAGTCTCGGTCTTTGACCGGCAGCCCTAACA 1490 Query 112170 GTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCA 112208 | | || || |||||||| ||||||||||| | |||| Sbjct 1491 GCGCGTCACGCACCGCGCCACCGACCAGATAACTCTTCA 1529 >seq85 Length=367292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 146717 GAACA--ATACGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCG 146774 ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 147046 GAACATGATACGGAGCGTAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCG 146987 Query 146775 CTGGTTCGATTC 146786 |||||| || Sbjct 146986 GGAGTTCGAATC 146975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477022029332240