Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq19823 100 1e-16 seq6038 93.3 2e-14 >seq19823 Length=496 Score = 100 bits (110), Expect = 1e-16 Identities = 242/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 54186 GAACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACATCAACGGTGAGCTGGTG 54245 || ||| ||||| |||||||||| |||| |||| | | |||| ||| |||| Sbjct 367 GAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGGGAAGCAGGTG 308 Query 54246 TGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGT-GAGCGTGGCCTCATCCCCGG 54304 |||||| | || ||||| |||||| ||| | |||| || || |||||||||||||| Sbjct 307 TGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCG-GGCCTCATCCCCGG 249 Query 54305 CAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCCGAAGGGCTGCATTC 54364 ||||| || ||||| ||||| || || ||| |||| | |||| | || Sbjct 248 GTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCCGCAGTCGCTGAACTC 189 Query 54365 CGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGCACGCAAGCTGTTCACCGT 54424 | | |||||||| ||||| || ||||||||| | ||| || | ||||| Sbjct 188 CTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGGCGGACCTTCACGCA 129 Query 54425 CGACGACCTCGCAGACCGTATGCGCGGCATCGAATACCGGCACGGTGAGGCGTGGGTCGA 54484 |||| | || ||| ||| |||||||| | ||| || || || | |||| Sbjct 128 CGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACACCGATGCCTTCATCGA 69 Query 54485 CGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATGCACGACGCCGAAGACCTCGT 54544 |||||| || | || ||||||||||| ||| || ||| || |||| | ||||| Sbjct 68 CGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGGATGCCGCCGGACTCGT 9 Query 54545 GTCG 54548 ||| Sbjct 8 ATCG 5 >seq6038 Length=789 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 415 GGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTG 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200321462383434