Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8653 154 3e-32 seq3381 129 1e-24 seq1351 93.3 8e-14 seq6863 87.8 4e-12 >seq8653 Length=1535 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || ||||| || ||||| || ||||| || || || || Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||||||| ||||| || || |||||||| | | ||||||||| || || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || |||||||||||||| || || || || || || ||| || || Sbjct 314 ATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACC 373 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 || | || || ||||| || ||||| ||||||||||| || ||||||||||||| || Sbjct 374 TCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATTATTATATGTT 431 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || ||| || | | ||| || || || || || || |||||| Sbjct 2 TCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAG 61 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || ||||| || || ||||| ||||||||||| ||||| || || || || Sbjct 62 ATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTC 121 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || ||| || || || | || || |||||||| || | ||||| ||| Sbjct 122 TCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCACA 181 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 182 AAGATCTGCATT 193 >seq3381 Length=12314 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || | || || | || ||||| || |||||||| || || || ||| Sbjct 959 TACCTCCTCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAC 900 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || || || ||||||||||| || | || ||||| || | Sbjct 899 CGAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTG 840 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| || || ||||||||||| || || || | Sbjct 839 GGATACCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAA 780 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 779 CCTCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCAT 731 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || || |||||||| || || || ||| || | | ||| ||| Sbjct 1170 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTACGACCATCT 1111 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| ||||||||||| || || | || || || || || || |||||||| ||| Sbjct 1110 TCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCCTTGTCT 1051 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || ||||| ||||| || || || || || | ||| |||||| Sbjct 1050 TGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGAGTGATCGTC 991 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| ||||| |||||||| Sbjct 990 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| ||||| ||||||||||| || || || || || || ||| | | ||| || Sbjct 1398 AGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCC 1339 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || || |||||||| || | ||| ||||| || || || || ||||||||| Sbjct 1338 TCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCT 1279 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || || || || || ||||| | || || || | || || ||| Sbjct 1278 TGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTC 1219 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| || ||||| Sbjct 1218 TTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| ||||| ||||||||||| || || || || || || ||| | | || || Sbjct 1626 AGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCAAGAGTGCGGCCATCC 1567 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||||||||| | | || || || || || || || ||||||||| Sbjct 1566 TCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTATCT 1507 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||||| ||||| || ||||| |||||| ||| || || | ||| || ||| Sbjct 1506 TGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGAGTGATAGTC 1447 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || |||||||| Sbjct 1446 TTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 >seq1351 Length=12664 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| || || || || || || || ||||| || ||| | | ||| || || Sbjct 5140 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATCCTCA 5081 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || || |||||||| || | || || || || || ||||| ||||| |||||| Sbjct 5080 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGA 5021 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || || || || || || ||| || || || | || || |||||| Sbjct 5020 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAGTGTGATGGTCTTG 4961 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| || || |||||||| Sbjct 4960 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq6863 Length=4430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| ||||| | || ||||| ||| | ||||| || || ||||| Sbjct 1325 CCACCTCTCAAACGTAGAACCAGATGAAGAGTCGATCCCTTCTGGATGTTGTAATCGTCC 1384 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | | || || || ||||||||||||||||| |||||||||||||| | || Sbjct 1385 ATTGTGCGATCATCCTCCAGCTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCTGTGGG 1444 Query 82704 ATTCCTTC 82711 || ||||| Sbjct 1445 ATACCTTC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981472113908953