Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq19 140 8e-28 >seq19 Length=770976 Score = 140 bits (154), Expect = 8e-28 Identities = 543/845 (64%), Gaps = 9/845 (1%) Strand=Plus/Plus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || |||||||| || ||||| |||||| | ||| | || | | || | || Sbjct 361454 GATTATTTTGGGTTTAAAACCCTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATT 361513 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | ||||| || ||||| ||||| | |||||||| | || ||||| | | |||||| Sbjct 361514 GTAGAACGCCCGCAACATTTGTTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATT 361573 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 || || |||| | ||| | | | ||| | || ||||| || || Sbjct 361574 GAAAGTGCGATTGCAACGTATAACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCA 361633 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || ||||||| |||| || | | ||| || |||| |||||| | || || Sbjct 361634 ACTTTATTTAATGCAGCTACCCCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATG 361693 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | || || ||||||||| ||||| ||| || | ||| |||| ||| ||||| || Sbjct 361694 CAGGACGACAGTATTGAAGGAATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAA 361753 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | | || || |||||| | | | ||| | || || | | ||| | |||| | Sbjct 361754 AGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCTTATATTGGT 361813 Query 110661 ACAGCGAA-GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | || ||| | ||| ||| |||| || ||||| | ||| || ||||| || || Sbjct 361814 GGAACAAACGGGACCAGCAATGGGA-TTGTACCTATGTTGAAAGTATTTAACGATACCGC 361872 Query 110720 AAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 |||||| | || ||||| ||| | || || | ||||| || || || || || Sbjct 361873 CCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTACCTGGAGCC 361932 Query 110777 TTGGCATTCAGATATATTTGAATTCT-TAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 |||||| ||||| | | || || | | || || |||||||| || || ||||||| Sbjct 361933 ATGGCATGCAGATGTGCT-GAGTTTTCTGGACCTGCGTAAAAACCATGGTAAAGAAGAAC 361991 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | || | |||||||| ||||| | ||| | | || | ||||||| | | || Sbjct 361992 TTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGAAGGGTAG 362051 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||||||| || ||| | | | ||||||||| | || || || | ||| | Sbjct 362052 AAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCAGATTGCT 362111 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAA 111014 ||| ||| || || | | || || || ||||||||||| | || | | ||| Sbjct 362112 TTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGG-ACGTGCCCGTAAA 362170 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| ||| ||||| |||||||| || || || ||||| ||||||| ||||| Sbjct 362171 ACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACCGGAACC 362230 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||||| | |||||||||||| || ||||||| || || ||||||||||| Sbjct 362231 CCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTAGGAACC 362290 Query 111135 ATTAA 111139 || || Sbjct 362291 ATCAA 362295 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 112599 AACCTAAATAAAATTATTGA-CAAAACGACCTATCCAATTCAAAAAGCAAAACATTCTAA 112657 ||||| |||||||||||||| || || | ||||| | | |||| ||| |||| || Sbjct 362447 AACCTGAATAAAATTATTGATCATAATTAT-TATCCGGTAGAGGAAGCTAAAAATTCCAA 362505 Query 112658 TAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGATGTATTTATGATGAT 112717 | || |||||| |||| | || ||||| ||||| || |||| ||||| |||| Sbjct 362506 CATGCGCCACAGACCAGTTGGTTTAGGTGTACAGGGATTGGCAGATGCTTTTATCCTGAT 362565 Query 112718 GCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAGATTTTCGAAACAAT 112777 ||| | || ||||| ||| | || ||| | |||||| || | ||||| ||||| || Sbjct 362566 GCGTTTACCATTTGAAAGTGAAGGGGCAAAAATTTTAAATAAAGAAATTTTTGAAACGAT 362625 Query 112778 CTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTAAA 112820 ||||||||||| ||||| | || |||| || ||| ||||| Sbjct 362626 TTATTTCGCTGCCATGACGGCCTCACATGACCTGGCTGTTAAA 362668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186383579137147