Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq3931 248 2e-61 seq9743 154 3e-33 seq8746 125 2e-24 seq15223 104 5e-18 seq1016 93.3 1e-14 seq8907 87.8 4e-13 >seq3931 Length=1953 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 1303 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 1362 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 1363 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 1422 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 1423 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 1482 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 1483 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 1542 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 1543 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 1602 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 1603 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 1662 Query 1761 CG 1762 || Sbjct 1663 CG 1664 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 116 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 175 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 176 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 235 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 236 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 295 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 296 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 355 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 356 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 415 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 416 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 471 >seq9743 Length=5680 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 1048 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 989 Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 988 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 930 Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 929 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 888 Score = 91.5 bits (100), Expect = 3e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 167 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 108 Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 107 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 48 Query 26647 AACATGGTCAAGGCGCAGAAGAAGGCCGAC 26676 ||||||||||||||||| |||||||| Sbjct 47 GGGATGGTCAAGGCGCAGAAAGAGGCCGAC 18 >seq8746 Length=2069 Score = 125 bits (138), Expect = 2e-24 Identities = 121/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 8801 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8860 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 1750 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 1692 Query 8861 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8918 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 1691 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 1634 Query 8919 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 8950 | || || |||| || ||||| ||||||| Sbjct 1633 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 89.7 bits (98), Expect = 1e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9200 ATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCT 9259 ||||||||||||||| | || || |||| || || ||||| || || ||| ||| Sbjct 1370 ATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGC 1311 Query 9260 CGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTG 9319 ||||| ||||| ||||| |||||||| ||| | ||| |||||||||| | |||||| Sbjct 1310 CGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTG 1251 Query 9320 GTCGAACTCCAGCGCCTGGGCTGG 9343 | ||| | ||| |||||||| Sbjct 1250 GCCGAGTTTGCCCGCTTGGGCTGG 1227 >seq15223 Length=1953 Score = 104 bits (114), Expect = 5e-18 Identities = 252/377 (67%), Gaps = 10/377 (3%) Strand=Plus/Minus Query 26866 GACCGATTCGCGCAGCAGCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGC 26925 ||||| || || |||||| ||||| |||| | |||| | ||| ||||| | Sbjct 1830 GACCGGTTTGCTCAGCAGTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAAC 1771 Query 26926 ATGAGCCTCGACGAGTACAA-CGACAAGCTCAAGGCGCTGGAAG---CGAACCATGCCGC 26981 ||| || |||| ||| ||| || | || |||||| | || ||||| | ||||| Sbjct 1770 ATGTCGGAGGAGGAGTTCAAGCGAAAATCCCA-GGCGCTTGCAGATGCGAACAAGGCCGC 1712 Query 26982 GA-TGACCCAGCAGCTGCAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGG 27040 | ||||| || | | | ||||| || || | || ||| |||||| ||||| Sbjct 1711 CACTGACC----AGATCCGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGA 1656 Query 27041 TCAACGGGGCGACGTCGGCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCC 27100 || || ||||||||||| | || ||||| | || || || | ||||| ||| |||| Sbjct 1655 CGAAGGGCGCGACGTCGGCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCC 1596 Query 27101 AGACCTACGAACTGTTTAGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCG 27160 ||||| | ||||| | || |||||| | | ||||||| || || || || |||| Sbjct 1595 AGACCAAAAGCCTGTTCGGCAATGCCTTCAGCAGCATGGAGGACGCGGTAGTCAACTTCG 1536 Query 27161 TGATGACTGGCAAGGCGTCGCTGGATGACTTCGTCCGCACCATGATTGGCGACGTGGCCA 27220 ||||| |||||||| ||| | ||||||| | || ||| ||| ||||| Sbjct 1535 CAATGACCGGCAAGGCATCGTTCTCGGACTTCGCTAAATCGATCCTTGCAGACATGGCCC 1476 Query 27221 GGATGGCGACCCGCCAG 27237 | || || ||||||||| Sbjct 1475 GCATTGCTACCCGCCAG 1459 >seq1016 Length=5115 Score = 93.3 bits (102), Expect = 1e-14 Identities = 168/241 (70%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 10945 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 1150 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 1206 Query 10946 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 11005 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 1207 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 1266 Query 11006 CGCGCATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11062 || | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 1267 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 1323 Query 11063 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11122 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 1324 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 1383 Query 11123 C 11123 | Sbjct 1384 C 1384 >seq8907 Length=1284 Score = 87.8 bits (96), Expect = 4e-13 Identities = 263/399 (66%), Gaps = 14/399 (4%) Strand=Plus/Plus Query 4876 ATCCTGGGTGAAATGGGCATCAAGCCGGCCGGGACCATCCCGGAAATGGCCGACCAGATC 4935 ||||| | || ||| ||||| | |||||| |||||| ||| |||| |||||||||| Sbjct 336 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 395 Query 4936 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 4995 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 396 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 455 Query 4996 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 5049 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 456 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 509 Query 5050 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTCAAGAAGTACGAACGCTTCCAT 5109 || | ||||||||||| ||| |||| | || |||| |||||| | ||| Sbjct 510 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 569 Query 5110 GGCCGCGTTCTCAGCTGGGTTCCGGCCCAGCCAGTGTCCCTGGAGGACGCCCGCAACCTG 5169 ||| || || ||||| || || |||| | ||||||| || ||| |||| Sbjct 570 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 629 Query 5170 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGATTTGCTCGCGCACCTGGTGAA 5228 || | ||| | |||||| | || ||||||| |||||||| | ||||| || Sbjct 630 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 688 Query 5229 GAAGTCCCTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 5267 |||| |||| | ||||| || ||||| ||||| Sbjct 689 GAAGGTGAATGGCTGCCTGCGTCGTGTAGCGGTCAACCT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117720527363200