Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq2516 217 2e-51 seq2261 132 5e-26 seq3869 86.0 7e-12 >seq2516 Length=21774 Score = 217 bits (240), Expect = 2e-51 Identities = 163/190 (86%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 61271 TTAGCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAG 61330 |||||| ||| || || || ||||||||||| ||||| ||||||||||| |||||||| | Sbjct 1967 TTAGCC-TTACAGGCTTTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCG 1909 Query 61331 TCAGAGAGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTT 61390 |||||||||| ||||| || || || ||||| ||||| |||||||||||||||||||||| Sbjct 1908 TCAGAGAGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTT 1849 Query 61391 CCGGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTT 61450 ||||||||| ||| || || ||| ||||| |||||||| ||||||||||||||||| | Sbjct 1848 CCGGATGCTCAACCGCGTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCT 1789 Query 61451 GACCACCTTC 61460 |||| ||||| Sbjct 1788 GACCGCCTTC 1779 >seq2261 Length=3986 Score = 132 bits (146), Expect = 5e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 61286 TCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGC 61345 ||| ||| |||||||| | ||||| || |||| ||||| ||||| |||||||| | Sbjct 679 TCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAAC 620 Query 61346 GAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTG 61405 | || || || || ||||||||||||||||||||||||||||||||||| | | | | Sbjct 619 GTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCG 560 Query 61406 CATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 | || ||| |||| || || ||||| ||||||||||| ||||||||||| || Sbjct 559 CGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTCGAT 502 >seq3869 Length=8584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 141891 TTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTT 141950 || ||||| | ||||||||||| || |||| ||||| | || ||| ||| ||| Sbjct 4363 TTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTT 4422 Query 141951 TTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCA 142010 ||||| || | ||| | || ||||| | |||||||| || || | || || || Sbjct 4423 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCG 4482 Query 142011 CCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAAT 142070 |||||||| | || || || || || ||||| || || || |||||||| || |||| Sbjct 4483 CCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAGAAC 4542 Query 142071 GGAAT 142075 ||||| Sbjct 4543 GGAAT 4547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535100729755760