Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq7329 232 2e-56 seq1891 183 8e-42 seq6417 167 6e-37 seq19415 89.7 1e-13 >seq7329 Length=1002 Score = 232 bits (256), Expect = 2e-56 Identities = 290/395 (73%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 7694 GAACCGCACCACCTCCTCCCCGATCCAGTCATTGACCGCCAACAGGCGGTCCTGCAATGG 7753 ||||| || ||||| || || | ||| || |||||| ||| | ||||||| || Sbjct 398 GAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGG 339 Query 7754 CTTCACCTCGTTGCGCGCGAACACCAGGGCGGCCTTCTCCA-CGTCGCCGAATCCGCCGG 7812 || || ||||||| ||| | ||| || |||| | || || | || || ||||| | Sbjct 338 CTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCG 280 Query 7813 TGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTGGTCGT 7872 ||| | ||| | ||||||||| | |||||| || | ||| ||| ||||| | |||| Sbjct 279 CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGT 220 Query 7873 CGCGCGTGACGTTTTTGACGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTA 7932 | || ||| |||||||| | ||| |||||||| || || |||||| |||||| | Sbjct 219 CACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGA 160 Query 7933 GCAGCTGGATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAGGTTGCGGAAATTGC 7992 ||||| || ||||| |||||||| |||||||||| ||||||||||| || |||| Sbjct 159 TGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAAGTTGC 100 Query 7993 CCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACATCCTCTTGCCTCTGCG 8052 | ||||| || | |||||| || |||||| | ||||| ||||||| | |||||| Sbjct 99 CTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCG 40 Query 8053 CCGCGTCGGTCATGTACAGGATGAAACCGGCGTGG 8087 ||||||||||||||||||| ||||||||||| ||| Sbjct 39 CCGCGTCGGTCATGTACAGAATGAAACCGGCATGG 5 >seq1891 Length=1650 Score = 183 bits (202), Expect = 8e-42 Identities = 606/930 (65%), Gaps = 67/930 (7%) Strand=Plus/Plus Query 17744 GTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCT 17803 ||| |||| |||||| || || ||| || |||| ||| | ||| |||||||| Sbjct 640 GTCGGCGCGCCATCCACAGGTTCGACAGCGCGAACAGCGTCACCAGTTGCGCCGTGTTCT 699 Query 17804 TCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACG 17863 || ||| || || |||||||||||| || ||||||||||||||||| |||||||||| Sbjct 700 TCGCCAGACCACGGAAGCGCACCTTCACATAACCGAACTGGCGCTTGATCACCCGGAACG 759 Query 17864 GATGTTCTACGCGAGCACGAATGCGCGCCTTGACCCGCTCCAACTCATCGACGAGC---G 17920 |||| || || || || | | |||||| || ||| | || || || | Sbjct 760 GATGCTCGACCTTGGCTCGTACCTGAGCCTTGGCCTTCTCAATCTTG-CGCTTGGCTTTG 818 Query 17921 CACCCGACACGGTG----------TTCTTGT-----CCAAGGCGCGGCGTTTGCTCGGTC 17965 || ||| | | ||||||| | | |||| |||| || || Sbjct 819 TACAAAGCACTGCGCTTATCAAGCTTCTTGTAAGTACTACGGCG-GGCGG-----CGATC 872 Query 17966 GCAATGCCACATGCCAACGCA-CCTTCAACTTCTGCACCTCTTCGCGCTTGTCGATGCCC 18024 ||||| ||| | | | |||||| ||| | ||| || |||| ||| Sbjct 873 ----TGCCAGATGACCCCCCGGCCTTCATGTTCAGG--------GCGTTTCTCGACGCCG 920 Query 18025 TGGTAGCCGGCATCG---CCGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCGCT 18081 ||| || || ||| |||| | || ||| | ||||||| || | || | Sbjct 921 GTGTAACCCGCGTCGGCACCGACCATGTT---CTCATCGCCGTGCAGCAGCTTATCGACC 977 Query 18082 TGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCC 18141 || || || ||| |||||||| |||||||||| |||| | ||||||| ||||| || Sbjct 978 TGGGTGACATCGGCCACGTTGGCCGCCGTGCCCACCACGCTGTGCACCAAGCCCGACTCA 1037 Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201 |||| || || |||||||| ||||| ||||| | |||||||||| ||||||||||| Sbjct 1038 TCATCGACACCGATGTGCGCCTTCATGCCGAAGTAGTACTGGTTACCCTTCTTGGTCTGA 1097 Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGC 18261 ||||| || ||||||||||| ||| ||||||||||| || ||||| |||||| Sbjct 1098 TGCATTTCCGGGTCGCGCTTACCGTCCTTGTTCTTGGTCGAACTCGGCGCATTGATCAGC 1157 Query 18262 GAGGCGTCGACCACCGTGCCCTCTTTGAGCA--GGTAGCCCT---TCGCACTGAGTTGCG 18316 | ||| ||||| | ||||| ||| | ||| | |||||| |||| | || | || Sbjct 1158 GTGGCATCGACGATCGTGC---CTTGGCGCAGCGACAGCCCTCGGTCGCCCAGA-TAGC- 1212 Query 18317 CGTTGACCGTCTGCAGAAATTGC-TCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAG 18375 | |||| | | || | || | |||| |||| ||| ||||||||| | || ||| Sbjct 1213 CATTGA-TGACAGCCAAGATGCCGGCGGCTAGTTCGTGCTTCTCCAGCAAACGACGGAAG 1271 Query 18376 CGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGA 18435 || ||| || || || | || | | | |||||||||||| || || Sbjct 1272 TTGAGGATGGTGGTTTCATCGGGGATACGCTCCAAG---CTCAGCCCCGCGAACTGGCGC 1328 Query 18436 TACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGC 18495 | | ||||||||||||||||||||||| || | |||||||| | Sbjct 1329 AGGATGGTGGTCTCGTACAGCGCCTCTTCCATCGCTGGATCGCTGTAACCGAACCAGTTT 1388 Query 18496 TGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTG 18555 |||| | ||| | ||||||||||| | ||| | | | |||| |||||| Sbjct 1389 TGCATCAGGTGCACGCGCAGCATCGCCATCAGCGGATAGGCCGGACGAC----CGCCTTC 1444 Query 18556 ACC----GGCGCATGCGGCGCTATCAACGCCAAAAACGCCTGCCACGGCACCACACGTTC 18611 ||| || ||||||| | ||||| || | || ||| |||||||||||| || || Sbjct 1445 ACCCTTGGGATAATGCGGCTCGATCAAGGCAATCAAACCCTTCCACGGCACCACCCGATC 1504 Query 18612 CATCTCATCCAGAAATACCTGCTTGCGCGT 18641 |||||| ||| || | || ||||| || Sbjct 1505 CATCTCGATCAGGAACAACTCTTTGCGGGT 1534 >seq6417 Length=1149 Score = 167 bits (184), Expect = 6e-37 Identities = 596/912 (65%), Gaps = 31/912 (3%) Strand=Plus/Plus Query 17744 GTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCT 17803 ||| |||| |||||| || || ||| || |||| || | ||| |||||| | Sbjct 185 GTCGGCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTT 244 Query 17804 TCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACG 17863 | ||||||| ||| |||||||||| | ||||||||||||||||| |||||||||| Sbjct 245 TGGCCAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACG 304 Query 17864 GATGTTCTACGCGAGCACGAATGCGCGCCTTGACCCGCTCCAACTCATCGACGAGC---G 17920 |||| || || || || | | |||||| || || | || || || | Sbjct 305 GATGCTCGACCTTGGCGCGCACCTGAGCCTTGGCCTTTTCAATCTTG-CGCTTGGCTTTG 363 Query 17921 CACCCGACACGGTGTTCTTGTCCAAGGCGCGGCGTTTGCTCGGTCGCAATGCCACATGCC 17980 || |||| || ||| || | | |||| | || ||||| |||| Sbjct 364 TACAG--CACGCTGCGCTTATCGAGTTTTTTGTAGGTGCTGCGGCGTGCCGCCACCTGCC 421 Query 17981 AACGCACCTTCAACTTCTGCAC-CTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCG 18039 | || |||| | || || ||| ||||| |||| || |||||| |||||| Sbjct 422 AGATAAC-TTCACGTCCTTCATGCTCGGGCCGCTTTTCGACACCGGTGTAGCCTGCATCG 480 Query 18040 CCGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCGCTTGCGTCACGTCGTTGACG 18099 || | || || || | || |||| ||| | | | || || || || || Sbjct 481 GCGCAGACCACGTTTTCGTCGCCATGCAGCAATTTGTCCACCTGGGTGACATCCGCCACA 540 Query 18100 TTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTGC 18159 ||||| |||||||||| ||| | |||||||| ||||| || |||| |||| ||||| Sbjct 541 TTGGCCGCCGTGCCCACTACGCTGTGCACCAGACCCGATTCGTCATCGGCGCCGATGTGG 600 Query 18160 GCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGC 18219 || ||||| || |||| ||||||| || ||||||||||||||||| || ||||||||| Sbjct 601 GCCTTCATGCCAAAATAATACTGGTTTCCCTTCTTGGTCTGGTGCATTTCCGGGTCGCGC 660 Query 18220 TTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTG 18279 |||||| ||||||||||| |||||||| ||||||| || ||||| | ||| Sbjct 661 TTGCCGTCCTTGTTCTTGGTCGAACTGGGCGCATTGATCAGCGTTGCATCGACGATGGTG 720 Query 18280 CCCTCTTTGAG---CAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACCGTCTGCAGAAAT 18336 |||| || |||| | | |||| | || | || | |||| | | || || Sbjct 721 CCCTGGCGCAGCGACAGGCCG-CGGTCGCCCAGA-TAGC-CATTGA-TGACAGC-GAGGA 775 Query 18337 TGC--TCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGT 18394 ||| | ||||| | |||| |||||||||| | || ||| |||||| || || Sbjct 776 TGCCGGCCGCCAGCTCGTGTTTCTCCAGCAAGCGGCGGAAGTTGAGAATGGTGGTTTCGT 835 Query 18395 CCGGCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACA 18454 | || | | ||| | | |||||| || || || || | || ||||||| Sbjct 836 CGGGGA-TGCGCTCCAGGTT--CAGCCCGGCAAACTGGCGCAGGATCGTGGTTTCGTACA 892 Query 18455 GCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCA 18514 |||| || |||||||| || | |||||||| | |||||| | || | |||| Sbjct 893 GCGCTTCCTCCATCGCTGGATCGCTGTAGCCGAACCAGTTCTGCAGCAGATGCACACGCA 952 Query 18515 GCATCG-TTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC----CGGCGCATGCGG 18569 |||||| || || || | || ||| | | | |||| || ||| ||| || Sbjct 953 GCATCGCCATCAACGGGTA--GG---CCGGACGGCCACCTTCACCTTTCGGATAATGTGG 1007 Query 18570 CGCTATCAACGCCAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATAC 18629 | | ||||| || | || ||| |||||||||||| || |||||||| ||| || | Sbjct 1008 CTCGATCAAAGCAATCAAGCCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAA 1067 Query 18630 CTGCTTGCGCGT 18641 || |||||| || Sbjct 1068 CTCCTTGCGGGT 1079 >seq19415 Length=1017 Score = 89.7 bits (98), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 8918 TCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTGCTGATCACGTCGTGCGCCTTGAGC 8977 |||| |||||| || ||||||||||||| ||| || |||| ||||||| ||||| ||| Sbjct 799 TCCGTCCAGCCCGCATCGAACTCCAGCCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGC 858 Query 8978 ACCAGGGCGGTTTTCACTTCCACGGAATAGGTGAAGCCTTCGGCGTCCGGGCGGAACTTC 9037 |||||| |||||| ||||| || ||| |||| | || |||| ||||| | Sbjct 859 ACCAGGCGGGTTTTGACTTCGGGTGAGTAGCTGAACGTGGTGATGTTCGGGAAGAACTGC 918 Query 9038 TGCACCAG--GCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGA 9095 | |||||| ||| || ||| | | ||| ||||||| ||||| || | ||||| | Sbjct 919 TTCACCAGCTGCGCCACGCCGGAAC-CCG-TGCCGGTGATATCGATCCCGATGTAGGTCA 976 Query 9096 CGTTGTAGCG 9105 | |||||| Sbjct 977 CCCAGTAGCG 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127841933574536