Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3381 109 1e-18 seq1351 100 7e-16 seq3382 91.5 3e-13 seq8653 87.8 4e-12 seq4240 87.8 4e-12 >seq3381 Length=12314 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || ||||||||| | || || || | || ||| Sbjct 962 CAGATCTTTGTCAAGACTCTCACTGGCAAGACGATCACTCTTGAGGTTGAGGGCTCGGAC 1021 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| ||| || ||| || Sbjct 1022 ACCATTGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCACCCGACCAGCAG 1081 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | || | | || |||||| || Sbjct 1082 CGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGTACCCTCGGTGACTACAACATC 1141 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || |||||| | || | ||||| || Sbjct 1142 CAGAAAGAGTCCACCCTTCACTTGGTCCTTAGACTCCG 1179 >seq1351 Length=12664 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || | |||||| Sbjct 4935 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCTGAC 4994 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || || ||||| || ||| || Sbjct 4995 ACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAGCAG 5054 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | || ||||| | ||| | | ||| || ||| | Sbjct 5055 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAACATT 5114 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||||| | || ||||||||||| Sbjct 5115 CAAAAGGAGTCCACCCTTCACTTGGTATTGAGACTTCG 5152 >seq3382 Length=4522 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || | || ||| Sbjct 4184 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCCGAC 4243 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || || |||||| || ||| ||| Sbjct 4244 ACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAGCAA 4303 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||||||||||||||| ||||| | || | | || ||||| || Sbjct 4304 CGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAATATC 4363 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| ||||| || Sbjct 4364 CAGAAGGAGTCAACTCTCCA 4383 >seq8653 Length=1535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || ||||| || ||||| | || || || | |||||||| || Sbjct 411 TTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTCTGACACTATC 352 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| |||||||||||| |||||||| || || || ||| | | Sbjct 351 GAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAACAACGTTTG 292 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| ||||| ||||| | ||||| || | ||| | | ||| |||||| | ||||| Sbjct 291 ATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAACATTCAGAAG 232 Query 206359 GAGTCTACTCTTCAC 206373 |||||||| || ||| Sbjct 231 GAGTCTACCCTCCAC 217 >seq4240 Length=2116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || || || | || || || | || ||||| |||| Sbjct 1230 AAAACACTCACTGGTAAGACTATTACCCTTGAGGTCGAGGGCTCGGACACCATCGAGAAC 1289 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| || ||| ||| | || ||||| Sbjct 1290 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAGCAACGTCTCATCTTT 1349 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| ||||| | || | | || ||||| ||||||| ||||| Sbjct 1350 GCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAATATCCAGAAGGAGTCA 1409 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 1410 ACTCTCCA 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181393384536067