Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq3869 190 2e-43 seq2516 147 2e-30 seq2100 118 1e-21 seq2053 87.8 2e-12 seq272 87.8 2e-12 seq345 86.0 7e-12 >seq3869 Length=8584 Score = 190 bits (210), Expect = 2e-43 Identities = 359/524 (69%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233 ||| | || ||||| || ||| | || |||||||| || || |||||||| | ||| Sbjct 4766 TCGCTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC 4707 Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41290 || |||| || | || || ||||| ||| | || || ||||| ||||| Sbjct 4706 GTGCTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCC---ACCTCCAGCGCGATT 4650 Query 41291 GTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 41350 ||||| || |||| || || || || ||||| | || || || | ||||||||| || Sbjct 4649 GTGAAATACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTG 4590 Query 41351 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 41410 || ||||| || || ||||| | || || ||| || ||||||| || ||| Sbjct 4589 GGCAGCCCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTACAAGCAT 4530 Query 41411 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 41470 | ||||| ||||| |||||||| || || || ||||| || || || || ||||| | Sbjct 4529 TTCCAGACCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTC 4470 Query 41471 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 41530 | || || || |||||| ||||||| |||| ||||||||| |||||||||||| ||| Sbjct 4469 TTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGT 4410 Query 41531 GTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590 || |||||| |||||||| |||| || || || ||| | ||| | ||||||| Sbjct 4409 ACCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTGATGTAC 4350 Query 41591 AAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCT---GACGTTGCAAATGAT 41647 | ||| | | || || | || || |||||||||||| ||||| | Sbjct 4349 ACCCGTCTGCTGAAGGGCGGCGATATTACCCTGTTCAGCCCTTCCGACGTCCC------G 4296 Query 41648 CGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 41691 |||||||||| || |||| || || |||||| ||||| || Sbjct 4295 GGCCTGTATGACGCCTTCT-TC--GCCGATCAGGACGAGTTTGA 4255 Score = 102 bits (112), Expect = 9e-17 Identities = 296/448 (66%), Gaps = 27/448 (6%) Strand=Plus/Minus Query 42337 CGATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTC 42396 ||| |||||| |||||||| || |||| | ||| |||| |||||||| || || Sbjct 3591 CGACTGGGAAGCATTGCGCGAGTCCATTAAAACTCACGGCCTGCGCAACTCAACGCTCTC 3532 Query 42397 CGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACC 42456 ||| | ||||| | |||| || || | |||| | || ||||| ||||| || Sbjct 3531 CGCACTGATGCCGTCCGAGACCTCGTCGCAGATCTCCAACGCCACCAACGGCATTGAGCC 3472 Query 42457 GCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTAC 42515 ||| ||||| | |||||| | ||| | || || || ||| || | | |||||| || | Sbjct 3471 GCCGCGCGGCCACGTGAGTATCAAAGCGTCCAAGGACGGTATCCTGCG-CCAGGTGGTGC 3413 Query 42516 CGAA---CCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCG 42572 || | | | ||| |||| | ||| || || ||| ||| | || || Sbjct 3412 CGGATTACGAAAACCTGCAGAACGC---CTACGAGCTGCTGTGGGAGATGCCGAACAACG 3356 Query 42573 GTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCT 42632 | ||||||||| | || | | | |||||||||||| | || || |||||| Sbjct 3355 ------ACGGTTATCTGCAGCTGGTGGGTATCATGCAGAAGTTTATCGACCAGTCGATCT 3302 Query 42633 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCA 42692 |||| ||||| ||||| |||||| | |||||| || |||||| | | | || Sbjct 3301 CTGCCAACACTAACTACGATCCGACGCGCTTCCCGTCCGGAAAAGTG----CCG-ATGCA 3247 Query 42693 TCA-TTG----ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCA 42747 || ||| | |||||||| | || | | | |||||| ||||| ||||| ||||| Sbjct 3246 GCAGTTGCTCAAAGACCTGCTCAACGCCTATAAATTCGGCGTCAAAACGCTGTACTATCA 3187 Query 42748 CAACACCCGCGACGGTGCAGGTGAAGAC 42775 ||||||||| || || || ||||||| Sbjct 3186 CAACACCCGTGATGGCGC---TGAAGAC 3162 >seq2516 Length=21774 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 || ||||| || |||||||| ||||| || ||||| ||||||||||||||| || || Sbjct 1776 GTCGAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCG 1835 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 || | ||||| || || || || ||| | || || || ||||| || || || || ||| Sbjct 1836 GTTGAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGC 1895 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 51197 || || | ||||| || ||||| ||||||||||| |||||| | |||||||| |||||| Sbjct 1896 TTCAACTCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGC 1955 Query 51198 ATGTAA 51203 ||||| Sbjct 1956 CTGTAA 1961 >seq2100 Length=19628 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 40039 GACCAGATT-GCTCGGATCGTCAACGAACTGAAAACCACACCAGACGATCGCGGGATCAT 40097 |||||||| || ||| | | ||| | ||||||| | || ||| ||| ||||||| Sbjct 19396 GACCAGATCAGCACGG-TGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGGATCAT 19454 Query 40098 CGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTT 40157 ||| || ||||||||| | || |||||||||||||| || ||||| ||| || Sbjct 19455 CGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTT 19514 Query 40158 CTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGA 40217 |||||||||| ||| | |||| || || || ||| |||||||||||| || Sbjct 19515 CTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCGA 19574 Query 40218 TGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATAT 40271 ||| ||| | || ||||||||||||||||| ||| || || ||| |||||| Sbjct 19575 TGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq2053 Length=29219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 103059 GTATGGTTTTTAACCAGATGTAAACTATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTC 103118 ||||| ||||||| || | | |||||||||||||||||||||||||||||||||||||| Sbjct 12551 GTATGTTTTTTAATCA-ACGCTAACTATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTC 12609 Query 103119 GCTCG 103123 ||||| Sbjct 12610 GCTCG 12614 >seq272 Length=21754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 || || || |||||||| || ||||| ||||| || || |||| ||| ||||| Sbjct 8036 GTGGAGGGGGGACAGCATCTCAACGTCAATGTACTGAACCGGGAAAAGCTGCTCGATGCG 8095 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 | |||| || ||| |||| || | | ||||||||||| || || ||||| || ||| Sbjct 8096 ATAGAACACCCGGAGCAGTATCCGAATCTGACGATCCGCGTCTCCGGCTATGCGGTCCGC 8155 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTAC 51190 ||||| || ||||| | || || |||| || || ||| || |||| || || Sbjct 8156 TTTAACGCGCTGACCCGCGAGCAGCAGCAGGATGTGATCTCCCGAACGTTCAC 8208 >seq345 Length=175672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 40086 TCGCGGGATC--ATCGTTTCCGCATGGAACCCTGTTGATC-TGGATAAAATGGCATTGCG 40142 |||||| || ||||||||||||||||| || | | || | ||| ||||||| ||| Sbjct 150720 TCGCGGCGTCTGATCGTTTCCGCATGGAATCC-GGCGCTCGTCGATGAAATGGCGCTGCC 150778 Query 40143 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 40202 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 150779 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 150838 Query 40203 TCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 40262 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 150839 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 150898 Query 40263 GAC 40265 ||| Sbjct 150899 GAC 150901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569818075850520