Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq345 161 1e-34 seq2100 152 5e-32 seq271 91.5 1e-13 seq12 86.0 6e-12 >seq345 Length=175672 Score = 161 bits (178), Expect = 1e-34 Identities = 381/569 (67%), Gaps = 36/569 (6%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||| ||||| | || |||||| || | || ||||| Sbjct 150435 TTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAA 150494 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||||||| || || |||||| ||| || ||||||||||| |||||||| ||||||||| Sbjct 150495 CTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATC 150554 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | || || ||| | |||||||||||||||||| || | || ||| | Sbjct 150555 GCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGAT 150614 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| |||||| ||| ||| | Sbjct 150615 CTCGGGCCGGTCTATGGCTATCAGTGGCGCTCCTGG-----CCT-----GCGCCCG---- 150660 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGA--TCATTACTGACTTGAAGAAGT 142540 || | || | ||||||||||| || | || | | || | ||| | Sbjct 150661 ------ACGGCCG-GCATATCGATCAGAT--TGCGAATCTCGTCAGTGCGATAAAGCAAA 150711 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| |||| || |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 150712 ATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTCGATGAAATGG 150771 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || || || ||| ||||||| ||| |||| | ||| | | | || || | Sbjct 150772 CGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGG--CCGACGGAAAG-CTTTCCT 150828 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| || ||||| || || || || |||||||| |||||||| || || || | Sbjct 150829 GCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCT 150888 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTC 142776 | || || || || |||| || | ||| | | |||||| | | || || ||| Sbjct 150889 ATGCCCTGCTGAC---CCTCA-TGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTC 150944 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||||| | ||| || |||| |||| Sbjct 150945 GTTCACACGCTGGGCGATGCGCATCTCTA 150973 >seq2100 Length=19628 Score = 152 bits (168), Expect = 5e-32 Identities = 325/479 (68%), Gaps = 30/479 (6%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || ||||| |||||||||||||| || ||| ||||||| || || | |||| ||| Sbjct 19153 ATTTTCGGCCATCAGATGCGTTTTAACCTGCAGGAAGGCTTCCCGCTGGTGACCACCAAG 19212 Query 142300 AAGCTG-CATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAA 142358 |||| ||| | || |||||| ||||| ||||||||||| | ||||| || || Sbjct 19213 C-GCTGTCATTTACGCTCCATCATCCATGAACTGCTGTGGTTCCTGCAGGGCGACACCAA 19271 Query 142359 CATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGG 142418 |||| ||||| ||||| ||||||||| |||||||| || ||||| |||| ||||| Sbjct 19272 CATCGCCTATCTGCACGAGAACAACGTCACCATCTGGGACGAGTGGGCGGATGAGAATGG 19331 Query 142419 CAACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGG 142478 | |||| || || ||||||||||| |||||| |||||| ||| ||| | Sbjct 19332 CGACCTGGGGCCGGTCTACGGCAAACAGTGGCGTTCCTGG-----CCT-----GCGCCG- 19380 Query 142479 AGATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAA 142538 |||| | || | ||||| |||||| || | | || | | |||| || Sbjct 19381 -GATG--------GCCG-CCATATCGACCAGATCAGCACGGTGATGAACCAGCTGAAAAA 19430 Query 142539 GTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACAT 142598 || | || || || ||||||| | || |||||| | || | || | || Sbjct 19431 CGACCCGGACTCCCGCCGGATCATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAAT 19490 Query 142599 GGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTG 142656 ||| || | ||||| ||| | ||||| ||| |||||| ||| | ||| || Sbjct 19491 GGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTACGTCG--CCGACGGCAAG---CTC 19545 Query 142657 TCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGC 142715 || |||||||||||||||||||| || |||||||||| | |||||||| || || Sbjct 19546 TCCTGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCCTCGGCCTGCCGTTCAATATCGC 19604 >seq271 Length=183270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 148837 TTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAG 148896 ||||||||||| || || ||||| |||| ||| | || ||||||||| Sbjct 70228 TTCATCGAGCGCATCGAGCGCCTTGAGGAAGAAAAGACCACGCTTCAGGACGACATCAAG 70169 Query 148897 GACGTCTACGGCG-ATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCAT 148955 || || | |||| | ||||| || |||| ||||||||||||| | | | || | Sbjct 70168 GAAGTG-ATGGCGGAAGCCAAGGGCCGCGGCTACGACACCAAGATCATCCGCACGATCGT 70110 Query 148956 CAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 | | | ||||||||||||| | | ||||||| |||||||||||| |||||||| ||| Sbjct 70109 CCGCCTGCGCAAGAAGGATGCGAACGAGCGCAAGGAAGAGGAAGCGATCCTCGAGCTGTA 70050 Query 149016 TCTCGCTGCTCTCGGCATGATC 149037 | || ||||||||| || Sbjct 70049 CATGAACGCCCTCGGCATGGTC 70028 >seq12 Length=339259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || || ||||||||| | ||||| || |||||||||| || || |||| || Sbjct 190699 ATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAA 190758 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || || ||| | || || || ||| |||||| | ||||| | | || || || || Sbjct 190759 AAACTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAAT 190818 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || || || | | |||| || |||||||||||||| |||||||||| || || Sbjct 190819 ATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGT 190878 Query 142420 AACCTCGGACCTGTCTACGG 142439 |||| || ||||| || || Sbjct 190879 GACCTGGGCCCTGTTTATGG 190898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500322605113520