Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq360 122 2e-23 seq11225 114 3e-21 seq102 109 1e-19 seq12700 93.3 1e-14 seq97 91.5 4e-14 >seq360 Length=29890 Score = 122 bits (134), Expect = 2e-23 Identities = 219/317 (69%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 125 GGCTGCTGCGGCTTACCCCATCCGCCTTGCTG---GCCGCC--CTGGCTTTGC-CCACCG 178 ||||||||||||| |||||| ||||| ||||| |||||| ||| | ||| || ||| Sbjct 27171 GGCTGCTGCGGCTGACCCCAACCGCCCTGCTGCTGGCCGCCGCCTGCCGGTGCGCCGCCG 27230 Query 179 GCCTGGTTATCGTTGGCCGCTGACAGCATCAACAACCGGCCATTCATGCCCACCACGATT 238 |||| |||||| ||||||| || ||| || | |||||| | | Sbjct 27231 CCCTGAC-------GGCCGCC--CAGCATCTGCATGGTGCCGCCCACGTTCACCACCACT 27281 Query 239 TCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCT 298 || || ||||| || || | || || ||||||||| || ||||| |||| Sbjct 27282 TCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCT 27341 Query 299 TCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCG 358 |||||| |||||| |||||| ||||| |||| | |||| ||| ||||| || ||| Sbjct 27342 TCAATGTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCG 27401 Query 359 AAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTC 418 || | || ||||||||||| || || | |||||| | || || |||||||| || | Sbjct 27402 AACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGC 27461 Query 419 CAGGTTTCAGACGTGGC 435 |||| ||| || || || Sbjct 27462 CAGGATTCGGAAGTTGC 27478 >seq11225 Length=5908 Score = 114 bits (126), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 215 CGGCCATTCAT---GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCC 271 |||||||||| | | || ||||| || || |||||||| | || || | | ||| Sbjct 4999 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC 5058 Query 272 TGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAC 331 |||| ||| || | || | |||||| | | | || ||| ||||| ||||| ||| Sbjct 5059 ---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 5115 Query 332 TGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCT 391 | | |||||||| || | ||| ||||||| || ||||||||||| || || || Sbjct 5116 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 5175 Query 392 TTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCC 451 | || || || ||||||||||| |||||| |||| ||||| | | || | || Sbjct 5176 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 5235 Query 452 ACGCCGTTGCCGTTCGGCAGCGT-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 ||| ||||||||||||| | || ||||| ||| || ||| ||| |||||| | || Sbjct 5236 ACGGCGTTGCCGTTCGG-GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAG 5294 Query 511 TTCTACTTTGTT 522 |||||||| Sbjct 5295 AATCACTTTGTT 5306 >seq102 Length=326246 Score = 109 bits (120), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 |||||||| || | ||||| ||| ||| | |||||||||||||||||| || |||||| Sbjct 30831 ACGATTTCCGTCGAATAGCGGTCATTGCCGGTCTGGTCCTGCCACTTGCGGGTCTGCAGC 30772 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 |||||||| | | ||||| |||| || |||||||| || | | ||||| Sbjct 30771 GCGCCTTCCAGATAAACCTTCATGCCCTTCTTGAGGTACTGTTCAGCCACCTTGGCCAGG 30712 Query 353 TT-TC--CGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 || || ||| ||||| |||| ||||||||| || ||||| || ||| || | | | Sbjct 30711 TTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGCTGTTC 30652 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAAT 438 || || |||| |||| || |||||||| Sbjct 30651 TTGTCGCGCCAGCTTTCCGAGGTGGCAAT 30623 >seq12700 Length=2524 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/204 (70%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | |||||||||||||| ||||| || | | ||| | | ||| || Sbjct 463 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 407 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||| |||||| ||| | |||| |||||||||||||| | | Sbjct 406 CTCGCGGNN----AGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 351 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| ||||| | ||| ||||| || ||| ||||||||||| ||||| || ||| Sbjct 350 GGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 291 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || || || ||||| || |||| Sbjct 290 CTGGCCGGTTTGCTTGTCGGTCCA 267 >seq97 Length=44549 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 296 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTT 355 ||||| ||| | |||| ||| |||||||| || | || || | ||| || ||||| Sbjct 4948 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4889 Query 356 CCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCC 415 ||||| | |||||||| |||||||| || | || | ||||||||||||| || || Sbjct 4888 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4829 Query 416 TTCCAGGTTTCAGACGTGGC 435 ||||||||| |||||||| Sbjct 4828 CGCCAGGTTTCCGACGTGGC 4809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135356213976062