Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq40 2511 0.0 seq3840 123 1e-23 seq2924 107 8e-19 >seq40 Length=14228 Score = 2511 bits (2784), Expect = 0.0 Identities = 1602/1742 (92%), Gaps = 0/1742 (0%) Strand=Plus/Plus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 5053 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 5112 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 5113 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 5172 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 5173 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 5232 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 5233 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 5292 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 5293 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 5352 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGAT 2137 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 5353 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGAT 5412 Query 2138 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 2197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5413 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 5472 Query 2198 CGTTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCG 2257 |||||||||||||||||||||| ||||| || || || ||||||||||| |||||||| | Sbjct 5473 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGG 5532 Query 2258 TGCAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTC 2317 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5533 TGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTC 5592 Query 2318 CGGAGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGCCCCCGAGCCGTA 2377 | |||||||| || |||||||||||||||||||||||||| |||||| | |||||||||| Sbjct 5593 CTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTA 5652 Query 2378 ATTTTTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTA 2437 |||| |||||||||| ||| ||||| |||||| |||||||||||||||||||||| || | Sbjct 5653 ATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCA 5712 Query 2438 GGATAATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCC 2497 ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5713 GGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCC 5772 Query 2498 AAGAACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCTCGAATGTAGCGGCGAAA 2557 |||| | ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||| Sbjct 5773 AAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAA 5832 Query 2558 TATCTGGGAACAGAGCGGCAAGAGGTCGTCGTCCCACGTTTTTTCCATGGAAGTAAGAAG 2617 ||||||||||||||||||||| | |||||| ||||| ||||| |||| || | || || Sbjct 5833 TATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAG 5892 Query 2618 GGCGTTAATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACG 2677 | |||||| ||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 5893 AGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACG 5952 Query 2678 TTCTGTAGTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACC 2737 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 5953 TTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACC 6012 Query 2738 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTT 2797 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6013 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTT 6072 Query 2798 GGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTGCGCG 2857 |||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||| Sbjct 6073 GGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCG 6132 Query 2858 GCGGCATTCATCCATCCATTCGGTAACACAGATCGGATGATTACGGTCTTTGCGGTAAAT 2917 |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct 6133 GCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAAT 6192 Query 2918 CCGACATGTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTC 2977 ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 6193 CCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTC 6252 Query 2978 GTTGATAATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 3037 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6253 ATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 6312 Query 3038 AGGGAAGGCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAG 3097 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 6313 AGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAG 6372 Query 3098 CAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGT 3157 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 6373 CAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGT 6432 Query 3158 GATTAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAG 3217 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6433 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAG 6492 Query 3218 CGTTGCGAGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGG 3277 ||||||||| |||||||||||| | ||||||||||||||||||||| || ||| ||| | Sbjct 6493 CGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGA 6552 Query 3278 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCG 3337 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 6553 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCG 6612 Query 3338 TCATCAAATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATG 3397 |||||||||||||||| |||||||||||||||||| || ||||| | || ||||||| Sbjct 6613 TCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATG 6672 Query 3398 CACAGCGATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTC 3457 || ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||| | | Sbjct 6673 CAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCC 6732 Query 3458 TCATTTTCTTCACGGGCAATTTGCCGGTAGTCTCGTGCCCATGACTGCTCTTCAATGCGA 3517 || || ||||||||||| || ||| |||||| || ||||| ||| | |||| ||| Sbjct 6733 TCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGA 6792 Query 3518 TC 3519 || Sbjct 6793 TC 6794 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 60834 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 60893 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 4094 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 4153 Query 60894 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 60953 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 4154 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 4213 Query 60954 CAATGAGTAGCAGAT 60968 |||||||| |||||| Sbjct 4214 CAATGAGTGGCAGAT 4228 >seq3840 Length=990 Score = 123 bits (136), Expect = 1e-23 Identities = 138/177 (78%), Gaps = 13/177 (7%) Strand=Plus/Plus Query 28430 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 28481 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 607 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 666 Query 28482 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 28540 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 667 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 725 Query 28541 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28597 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 726 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 779 >seq2924 Length=35545 Score = 107 bits (118), Expect = 8e-19 Identities = 240/352 (68%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 11670 CGGTAAACCTGGCACCGGGAAAAATCACCTTGCAGCAGCGATTGGCAACTGGCTGATG-- 11727 ||||||||| ||||| || ||||| ||||| || ||||| ||| ||||| |||| || Sbjct 24607 CGGTAAACCGGGCACTGGCAAAAACCACCTGGCGGCAGCCATTTGCAACGAGCTGCTGCT 24548 Query 11728 GCGAAGGGGAGAAGCGTGATTATCGTCACCGTGTCCGATGTCATGAGTGTGTTGCATGAC 11787 ||| ||| || | || | ||| |||||||| ||||| | ||| | | || | || Sbjct 24547 GCGC-GGGAAGTCG-GTCTTAATCATCACCGTGGCCGATATTATGTCGGCGATGAAAGAT 24490 Query 11788 GGCTATGACAACGGCAAGTCTGGTGA-GAA-ATTT--TTACAGGAGCTTTGTGGAGTTGA 11843 || | |||| | | | | || ||| | || ||| | || || | || || Sbjct 24489 ACCTTCGGCAACCGGGAAACGAGCGAAGAACAGTTGCTTA-ACGACCTCAGCATGGTCGA 24431 Query 11844 CCTTCTGGTCCTGGATGAAATTGGCATGCAGCGGGATACGCGCAACGAGCAGGTCATACT 11903 ||| ||||| | ||||||||||| |||||| || | ||| | || ||||||| | Sbjct 24430 CCTGCTGGTGATCGATGAAATTGGTATGCAGACAGAGTCTCGCTATGAAAAGGTCATTAT 24371 Query 11904 GAACCAGATCGTCGACCGCAGAACGGCATCACTGCGCAGTGTCGGGATGCTGACGAACCT 11963 || ||||| || ||||| | | | || || | ||||||||| || ||| Sbjct 24370 CAATCAGATAGTTGACCGGCGCTCATCCTCCAAACGACCTACCGGGATGCTCACCAACAG 24311 Query 11964 GAATCACGCAGCGATGAGCACACTCCTCGGCGAGCGGGTGATGGACCGTATG 12015 ||| | || ||||| || ||| ||||||||||||||||||||||||||| Sbjct 24310 CAATATGGAAGAGATGAACAAACTGCTCGGCGAGCGGGTGATGGACCGTATG 24259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200443020551020