Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq501 118 1e-21 seq3869 96.9 3e-15 seq4256 89.7 5e-13 seq2048 87.8 2e-12 >seq501 Length=12468 Score = 118 bits (130), Expect = 1e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 76784 TATTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCT 76843 ||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 4860 TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 4801 Query 76844 AACCACTGAGCTACGGGGCC 76863 ||||||||||||| |||||| Sbjct 4800 AACCACTGAGCTAAGGGGCC 4781 >seq3869 Length=8584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 284/432 (66%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || || || || |||||||||||||| |||||||||||||| || ||||| || || || Sbjct 4763 CTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTG 4704 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 || ||| | ||| |||| |||| || ||||| || || ||| ||||| | Sbjct 4703 CTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCCACCTCCAGCGCGATTGTGAAA 4644 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 || || ||| | ||||| || ||||| | | | ||| ||||| | | || ||| Sbjct 4643 TACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTGGGCAGC 4584 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCCTTTC-ATAA--AATATCT 4274 || ||||| || ||| | ||||| || ||| |||| ||| | || | | | Sbjct 4583 CCGATCCGCGGCGGCGAAGCCTTCCACACCGG-CTGCATTCCGTTCTACAAGCATTTCCA 4525 Query 4275 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACTTGCTA 4334 ||| | || | || || ||||| || ||||| | || ||||| | ||||| || Sbjct 4524 GACCGCGG---TGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTCTT 4468 Query 4335 TATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 4394 ||| || |||||| || | || | |||| ||||| |||||||||||| Sbjct 4467 CTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGTAC 4408 Query 4395 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTCATGTTCGA 4454 || | ||||| | || | || ||||| || | ||||||||| | |||| | Sbjct 4407 CGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTGATGTACAC 4348 Query 4455 ACGTCTGGTGAA 4466 |||||| |||| Sbjct 4347 CCGTCTGCTGAA 4336 >seq4256 Length=25676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| |||||||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 9988 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 10047 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 10048 CCGTTCTACCGACTGAACTACA 10069 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| |||||||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 11918 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 11859 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 11858 CCGTTCTACCGACTGAACTACA 11837 >seq2048 Length=13079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 76386 TTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGT 76445 || |||||||| | || | ||||| ||||| | |||||| ||||||||||||| |||| Sbjct 4006 TTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGT 4065 Query 76446 TCTACCGACTGAACTACA 76463 |||||||||||||||||| Sbjct 4066 TCTACCGACTGAACTACA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503080031846560