Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq2516 212 5e-50 seq501 141 7e-29 seq2261 123 2e-23 seq12 87.8 1e-12 >seq2516 Length=21774 Score = 212 bits (234), Expect = 5e-50 Identities = 158/184 (86%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| || |||||||||||||| |||||||| ||||| ||| || || ||| ||||| Sbjct 1785 GGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCGGTTGAGCAT 1844 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 |||||||||||||||||||||||||| ||||| ||||| || || || ||||| |||||| Sbjct 1845 CCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGCTTCAACTCT 1904 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAATGG 109288 ||||| |||||||||||||||||||| ||||| ||||||||||| || || || ||| || Sbjct 1905 CTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGCCTGTAA-GG 1963 Query 109289 CTAA 109292 |||| Sbjct 1964 CTAA 1967 >seq501 Length=12468 Score = 141 bits (156), Expect = 7e-29 Identities = 80/81 (99%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 9581 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTA 9640 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4859 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 4800 Query 9641 ACCACTGAGCTAAGGGGCCGT 9661 ||||||||||||||||||||| Sbjct 4799 ACCACTGAGCTAAGGGGCCGT 4779 >seq2261 Length=3986 Score = 123 bits (136), Expect = 2e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 ||||||| || |||||||| ||||| || || |||| ||| || || | | Sbjct 509 GTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGCGATGGAAA 568 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACT 109226 | ||||||||||||||||||||||||||||||||||| || || || || || ||||||| Sbjct 569 ACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACGTTTTAACT 628 Query 109227 CTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGA 109277 | ||||| |||||||||| || ||||| | |||||||| ||| ||| Sbjct 629 CCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCACTCAGA 679 >seq12 Length=339259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 9586 GTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC-A 9644 |||| ||| ||||| || ||||||||||||||| ||||||||||| ||| |||||||| | Sbjct 93102 GTGGGCCCAGCTGGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAACCAA 93161 Query 9645 CTGAGCTAAGGGGCCGTA 9662 |||||||| || ||||| Sbjct 93162 CTGAGCTATAGGCCCGTA 93179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386743707973153