Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13335 145 7e-30 seq19 100 3e-16 seq2999 82.4 7e-11 >seq13335 Length=4250 Score = 145 bits (160), Expect = 7e-30 Identities = 629/976 (64%), Gaps = 34/976 (3%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 || || || || || |||||||| ||| ||| || |||| || ||||||| | ||| || Sbjct 2009 GCAATCGATGCAAGGTTGCAGACAGCCACCTCCTCTGGCGACG-TGTACTGGATGATCTC 2067 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 || |||||||||||| | || || | || || || ||| || | |||||| Sbjct 2068 GGTGCACAGGTTGCTCGACGAGATAGTGCCGAGGTTCTGTTGGTTGGACTTGCCATTGCA 2127 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--AAAC 147636 || ||| ||| | || |||||||| ||| ||||||| || | || | ||| | | Sbjct 2128 CGAGTCCTTGTATAGGATGTACGGGGTGCCTGTCTCGATCTGGGACTCGAGGATCGAGAA 2187 Query 147637 CTATGCAGGTCCTGCGC-TCGCACCCGCTGC---CGATAGCGGCCCTCGTTTTCGTACCG 147692 | | |||||| || || | | || || ||| ||| ||| || |||| || Sbjct 2188 CCA--CAGGTCTTGTGCCTTGATGGTGCGGCGTGCGAGGCCGGGTGTCGCTT-CGTAGCG 2244 Query 147693 CTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGG 147752 | ||| | | |||| ||||| || ||||||||||| || || | ||| Sbjct 2245 CAGGTAGAGTTCGTTGAACTTCTCGCCCCAGGTGTCGGCAAGGCCTGGCGCCTCGTTCGG 2304 Query 147753 ACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCA 147812 || | || ||||| | ||| || | |||||| ||||||||| || | | ||| Sbjct 2305 GCAGAAGAGTGACCAGTCGGCGTTGGCCTCAACGCGCTGCATAAACAAGTCAGAGATCCA 2364 Query 147813 CAGCGCGTACATAAGATCGCGCGCTTTGCAA----TCCTCGGCGCCCATGTTGCGTTTCA 147868 || ||||| | || ||||| || ||| |||| | || | ||||| || Sbjct 2365 GAGTGCGTAGAAGAGGTCGCGAGCAC-GCATCTCCTCCTTGCCGTGGTTCTTGCG---CA 2420 Query 147869 AATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCT 147927 | ||| | | | || ||||||||||||||| || || | ||||| ||| | || || Sbjct 2421 GGTCAAGGAACTCCAT-GATGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCGCCC 2479 Query 147928 TTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATG 147984 || ||||| ||| |||||||| |||| || | ||| |||||| || |||| ||| Sbjct 2480 TTGCGCTTGCCGCCACCCTGGTCAACATAACGTGCAGTGTCGTTAAAGACACGCAGCATT 2539 Query 147985 GGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGC-CGCGGGCTCGCAC 148043 || |||| ||| ||| || ||||||||| ||| | || ||| ||| || | Sbjct 2540 GGAACCAGTCCGTTCGAGGTACCGTTGGTGCCGCGGATGTACGAGCGCGC-GGCACGGAT 2598 Query 148044 TTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTT--TGAT--ATGGCAGCGCAATCGC 148099 | |||||| | || ||||| ||| | |||| |||| || ||||| | Sbjct 2599 CTTGTGCACCGACAAACCGATGCCTCCGGCCGACTTGCTGATCAAT----GCGCACTGCT 2654 Query 148100 CCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAAC 148159 || || |||||| || ||||| ||||| || | | || || || || Sbjct 2655 TCAGAGTATCGTAGATTCCATCGATAGAGTCGTCCTTCATCTGCACCAGGAAGCATGACG 2714 Query 148160 ACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATT 148219 |||| || || || |||| |||| ||| || ||||| | || ||||| |||| Sbjct 2715 ACATCTGGGGCATTGGCGTGCCCGAGTTGAACAGCGTGGGCGTGGCATGCGTGAACAGGC 2774 Query 148220 TTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCA 148279 | || || || || | || ||| | || |||||| |||||| ||||| | Sbjct 2775 GACGCGACAGCAGCTCGTAGGTGTGGATGGCGGCGTCAATGTCGCGGCCGTGGATGCCGA 2834 Query 148280 GCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAA 148339 || || ||||| ||||||||||| || || ||| ||| | |||| ||| | | Sbjct 2835 TCGACACACGCATCAGCATGTGCTGGGGACGCTCGACAATCTCGTTGTCGATGCGCTGCA 2894 Query 148340 GATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAG 148399 | || | || ||||| || ||| | ||||| | | |||||||| || ||| ||| Sbjct 2895 GGTAGCTCTTCTCGAGTGTCTTGAAGCCAAAAAAGTCATAATCAAAGTCGCGCTTGTAGT 2954 Query 148400 CGATGGCCGCATCTAG 148415 ||||||| || || || Sbjct 2955 CGATGGCAGCCTCGAG 2970 >seq19 Length=770976 Score = 100 bits (110), Expect = 3e-16 Identities = 299/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCC 46883 ||||| || ||||||| ||||| ||| |||||| | || || || || || Sbjct 360403 GCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGT 360462 Query 46884 GCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTG 46943 | || || | | |||| | |||| | ||||| || || || || ||||| |||||| Sbjct 360463 TCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGTTG 360522 Query 46944 ATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTG 47003 || || | || || || | || || ||||| || || ||| || | || | Sbjct 360523 ATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCTCAAA 360582 Query 47004 AATGAGAAATTAAACTCGGACA-CGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| ||| | | | ||| || || || | || | | || ||||| ||||| Sbjct 360583 AAT---AAACTGAGCCAGGAAGTCGTTCATG-GAATTATCCGCGACGCGGTAGAAATCGA 360638 Query 47063 AAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTAT 47122 |||||| ||| |||| | || |||| || ||| || | || ||||| ||| | || Sbjct 360639 AAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAACTGAT 360698 Query 47123 GTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAG---CTCGGACA-ACCG 47177 || | |||||||||||||| || || | | ||| ||||| || || | ||| Sbjct 360699 GTCACAGTATATTGAGTTTGTTGCAGA----CAGATGGCTGCAGGAACTGGGTTATACCA 360754 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 |||||| | | ||| ||||||||||| |||||| | | || || || | |||||| Sbjct 360755 AAATATATCA-TGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 360813 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 |||||||| || |||||||| || || || ||| Sbjct 360814 ACCAATTTCTTTGAGAAACGTGTGGGTGATTAT 360846 >seq2999 Length=7307 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 51734 CTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCT 51793 |||||| ||||| | ||||||||||||||| | | | | | || || ||||| ||| Sbjct 411 CTCGACGTTGCCAAGGTCGCCGACGTGGCGAACCTCGTTGGTGGGCGCACCGTGTTCGAG 470 Query 51794 GCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTC 51853 | || |||||| ||||| | || |||| | ||||||| | |||||| || || || Sbjct 471 GTCGTGCGGGTTGTAGTGTGCACCGGCCGCCATGCAGCCATCAGAGGTGTCTCCAAACTC 530 Query 51854 GTGCACGTGGAATCCGTG 51871 ||| |||||||| || || Sbjct 531 GTGTACGTGGAACCCATG 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476443033695720