Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1351 96.9 3e-15 seq3381 89.7 5e-13 seq4240 86.0 6e-12 >seq1351 Length=12664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||||||||||||||| || | | ||| || | || || Sbjct 4913 CACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTC 4854 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || ||||| || | ||||||||||| | |||| | ||||||||| Sbjct 4853 AAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 4794 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGT 35703 |||||| ||| | | | | |||||| ||| || ||||||| ||||| || Sbjct 4793 GATCTTGGCCTTGACGTTCTCGATGGTGTCG---GATCCCTCGACCTCCAGAGTGATGGT 4737 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||| |||||||| || ||||| Sbjct 4736 CTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | | ||| || | || || || ||||| || ||||| Sbjct 4667 CTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAA 4608 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || |||||||| | || | | |||||||||| |||||| ||| | | Sbjct 4607 GATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTT 4548 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| ||| || ||||| | ||||| || || || || | || || Sbjct 4547 CTCGATGGTGTCG---GATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTT 4491 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 4490 GACGAAGATCTGCAT 4476 >seq3381 Length=12314 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | || | ||||| || | ||| |||||||| |||||||| ||| || Sbjct 1641 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG-CC 1583 Query 35570 AAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 1582 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGG 1523 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||| || ||||||| ||| | | | | || || ||| || Sbjct 1522 GATACCCTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAAC 1463 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || ||||| || | ||| || || || |||||||| Sbjct 1462 CTCGAGAGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 >seq4240 Length=2116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| ||||| ||||| || | | || || |||| || Sbjct 1652 CACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTC 1593 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| Sbjct 1592 GAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTG 1533 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | ||||| ||| ||||| | ||||| || || Sbjct 1532 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTT 1473 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || |||||||| Sbjct 1472 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450634543113160