Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq345 122 3e-23 seq5886 100 1e-16 >seq345 Length=175672 Score = 122 bits (134), Expect = 3e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGAC 4576 ||||||||||| | |||| ||||||| || ||||| ||||| | |||| || Sbjct 165530 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 165589 Query 4577 CTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTG 4636 ||| || ||||| || || || | ||||||||||| | |||||||||||| | Sbjct 165590 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 165649 Query 4637 GCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGC 4696 |||| | || ||||||||| | || || | || |||||||| | ||| |||||||| Sbjct 165650 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 165709 Query 4697 CAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGG 4746 ||||| ||||||||||| ||| | || ||| | ||| |||||||| Sbjct 165710 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGG 165759 Score = 91.5 bits (100), Expect = 5e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4173 TTTTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTG 4232 |||| || || ||||| |||||||| || |||||||| || ||||||||| | |||||| Sbjct 165270 TTTTTCGGCTTTTCGGCTATGCCGGTACCGGCAAGACGACGCTGGCCCGCTATTTCGCTG 165329 Query 4233 AGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCT 4290 || | | ||||| |||| ||||||||| |||||||||||||| | ||||| Sbjct 165330 AGCATATTGACGGCGACGTGCAGTTCGCCGCTTTCACCGGCAAGGCCGCGCAGGTCCT 165387 >seq5886 Length=7538 Score = 100 bits (110), Expect = 1e-16 Identities = 167/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864 || || || || || |||| |||||||| |||| ||||||||| | | | ||||| Sbjct 86 CGTCCGGCGGTGGAAGCCGGCGAGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAG 145 Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCC-CGACGA- 36922 || | ||||||||| |||| | |||||| | ||| || | ||| ||| | Sbjct 146 ATCGACCCGTACCTGCGCCCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATAC 205 Query 36923 -TGGCCAAGCGCCTGCAGGAGACCCGCCAGCT---CGAGATCGCCCCGCTGGCCTACATG 36978 ||||||||| || ||| |||||| | ||||||||||||||||||||||||| Sbjct 206 GTGGCCAAGC---TGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATG 259 Query 36979 CGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCACC 37035 || ||||| || | ||| ||| ||| |||| |||||| | |||||| ||||| Sbjct 260 CGTGGCCGTACGCTGAACAACAGCTTCATCATTCTCGACGAAAGCCAGAACACCACC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180736197703626