Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8653 149 6e-31 seq3381 140 3e-28 seq1351 134 1e-26 seq3382 116 4e-21 seq13839 109 6e-19 >seq8653 Length=1535 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| |||| ||| | ||| || || || ||||| |||||||||||||||| Sbjct 192 TTCCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGC 251 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| || ||| || || || ||||| ||||| |||||||| || |||||||| | Sbjct 252 CGAGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTG 311 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| ||| ||||| || | ||||| || || | Sbjct 312 GGATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGA 371 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || || || || || || ||||||||| Sbjct 372 CCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATT 421 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| |||||||||||||| || | ||| || || |||||||| ||||| ||||| Sbjct 2 TCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAG 61 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 || | ||||||||||||||| || || || || || ||||| || || ||||| Sbjct 62 ATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTC 121 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | ||||| || || || ||||| || || || || || || | ||| || || Sbjct 122 TCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCACA 181 Query 134703 AAAATTTGCATT 134714 || || |||||| Sbjct 182 AAGATCTGCATT 193 >seq3381 Length=12314 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| | || | ||| || || ||||||||||| ||||||||||||||| Sbjct 1641 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCA 1582 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| ||||| |||||||||||||| ||||| || Sbjct 1581 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGG 1522 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || ||| || || || | || || || ||| || Sbjct 1521 ATACCCTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACC 1462 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || ||||| || | ||| || ||||| || ||||| Sbjct 1461 TCGAGAGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||| | ||||| || || ||||| || || || ||||||||||| || Sbjct 957 CCTCCTCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCG 898 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || |||||||| ||||| ||||| || | ||||||||||||||| || Sbjct 897 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGG 838 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || || || || | |||||||| || || Sbjct 837 ATACCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACC 778 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || ||||| ||||| || |||||||| || Sbjct 777 TCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCATGTT 728 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| | || | ||| || || ||||||||||||||||||||||||||| Sbjct 1413 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCA 1354 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || ||||| || ||||| ||||| || | ||| ||||||||||| || Sbjct 1353 AGAGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGG 1294 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | || || || || || Sbjct 1293 ATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACC 1234 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| ||||| || || || |||||||| Sbjct 1233 TCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || ||||| || || || ||||||||||| || Sbjct 1185 CCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCG 1126 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | || || || |||||||| | ||||||||| ||||| || Sbjct 1125 AGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGA 1066 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || ||||| || | ||||| || || || Sbjct 1065 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACC 1006 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || | ||| || || || || ||||| Sbjct 1005 TCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 >seq1351 Length=12664 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| || ||||| |||||||||||||||||||| || Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | ||||||||| ||||| || Sbjct 4870 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGA 4811 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | |||||||| || || Sbjct 4810 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4751 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || |||| ||| || || || |||||||| Sbjct 4750 TCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||| ||| || | ||| || ||||| |||||||||||||| ||||||||| Sbjct 5158 CCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCA 5099 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| ||||| || | ||||||||| ||||| || Sbjct 5098 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 5039 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | ||||| || || || Sbjct 5038 ATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACC 4979 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 4978 TCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 118 bits (130), Expect = 1e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || ||||| |||||||||||||||||||| || Sbjct 4702 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4643 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || || || ||||| ||||| |||||||| ||||| ||||| || Sbjct 4642 AGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGG 4583 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | |||||||| || || Sbjct 4582 ATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4523 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| || ||||| Sbjct 4522 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 >seq3382 Length=4522 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| || ||||| |||||||| ||||||||||| Sbjct 4179 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 4120 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||| || || ||||| || | ||||||||| ||||| || Sbjct 4119 AGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 4060 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | || ||||| || || Sbjct 4059 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 4000 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | ||| || |||||||||||||| Sbjct 3999 TCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq13839 Length=228 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| || ||||| |||||||||||||||||||| || Sbjct 156 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 97 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | ||||||||| ||||| || Sbjct 96 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 37 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||||||| || Sbjct 36 ATTCCCTCCTTGTCTTGAATCTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505220076492040