Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq345 93.3 5e-14 seq2100 87.8 2e-12 seq48 84.2 3e-11 >seq345 Length=175672 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 177003 AGTTTCTTGGTGGTCACGGCAGGAAAGCCCTTGGACAGGTCGAAACGTATCTGGCGACCA 177062 ||||||||||| |||| ||||||||| ||| ||||| ||||| || |||||| || Sbjct 150496 AGTTTCTTGGTCGTCAGGGCAGGAAAACCCGCCGACAGATCGAATCGCATCTGGTAGCCG 150437 Query 177063 AATACGGACCTTGTGCCAGTTCCGGTACGATCATCGGCATCGACGCCGTTTTCCAGCAC 177121 || ||||| | |||||| || |||||||| || || ||||||||| | || ||||| Sbjct 150436 AAAACGGAACGTGTGCCTGTCCCGGTACGGTCGCCGCGGTCGACGCCGGTATCGAGCAC 150378 >seq2100 Length=19628 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 176510 GGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGA 176569 |||||| ||||| || || || | ||| || || ||| ||||||| | ||||||| Sbjct 19605 GGCGATATTGAACGGCAGGCCGAGGAACACATCGCAGGAACGCTGATACAGCTGGCAGGA 19546 Query 176570 CAGTTTCCCGTTGCGGACATAGAACTGGAAACCGTAGTGACACGGCGGCAAAGCCATTAG 176629 || || |||| | ||| ||||||||||| | ||| ||||||| || |||||| Sbjct 19545 GAGCTTGCCGTCGGCGACGTAGAACTGGAAGAAGGCGTGGCACGGCGCCAGCGCCATTTT 19486 Query 176630 ATCGACCGCCCCGACATTCCAAGCCGAGACCAT 176662 ||| | | | ||||| ||||| |||||||| || Sbjct 19485 ATCCAGCTCGCCGACGTTCCATGCCGAGACGAT 19453 >seq48 Length=607718 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 95631 TGCGGGGTAGTAGCAGTGGTTAGCTCGTCTGCCTCATAAGCAGAAGGTCATCAGTTCGAA 95690 |||||||| | |||||| | ||||||||| | ||||||| | ||||||||||||||||| Sbjct 383500 TGCGGGGTGG-AGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATCAGTTCGAG 383558 Query 95691 TCTGATCCCCGCAACC 95706 |||| ||||||| ||| Sbjct 383559 TCTGGTCCCCGCTACC 383574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622695412158120