Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 269 4e-67 seq3533 187 3e-42 seq3128 93.3 6e-14 >seq19 Length=770976 Score = 269 bits (298), Expect = 4e-67 Identities = 591/877 (67%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||||||| || ||||| || |||||||| || ||||| |||||||||| || || || Sbjct 360853 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 360794 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 | ||||| |||||||||||||| || |||| |||| |||| || | || | ||| | Sbjct 360793 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 360734 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 | |||| ||||||||||| || || || | ||||| || |||||| || || | Sbjct 360733 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 360674 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | ||| || | || || || | ||| || |||||||| ||||| || || || | Sbjct 360673 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 360614 Query 39564 -TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || ||| || || || | ||| || || | |||| | | | |||||| Sbjct 360613 TTCCATG-AACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCA 360555 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||| | ||||||||||| ||| || || ||| ||| || || || ||| Sbjct 360554 AATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGC 360495 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG-AAAAGAAGATGCC 39741 || || || | ||||| | ||| || || | | || ||| ||| | ||||| ||||| Sbjct 360494 ATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAATGCC 360436 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801 ||| ||||| || || || || | | || | || || | | | ||||| Sbjct 360435 TTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCG 360379 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||| || ||||| |||||||||||||| | || |||| |||| || || Sbjct 360378 CAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCT 360319 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||||| ||| |||||||| ||| ||||| || | ||| ||| |||| || || Sbjct 360318 GTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTG 360259 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||||||| ||| ||||| || || |||||||| | ||||| | || ||||| || Sbjct 360258 GATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC 360199 Query 39982 TGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | || || | | || | |||||||| || || || ||||| || |||||||| | Sbjct 360198 -GCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 360140 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 | | || ||| ||| |||| || | | | || || | ||||| || | Sbjct 360139 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 360080 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | | || | || | ||||||||| ||||| || || || ||| || ||||| | Sbjct 360079 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 360020 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| || ||| | |||| || || |||| |||||| Sbjct 360019 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 359983 Score = 269 bits (298), Expect = 4e-67 Identities = 799/1225 (65%), Gaps = 28/1225 (2%) Strand=Plus/Minus Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| || ||||||| ||||| ||||| | ||||| | | || ||| || ||| || Sbjct 362637 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 362578 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||| || | | || ||||| ||||||||||||||||| || || | ||| | ||| Sbjct 362577 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 362518 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || || | | | || ||| ||| |||||| | |||||||||||| ||| |||||| Sbjct 362517 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 362458 Query 69187 TTATTAAGATTTCGGA----CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA 69242 ||||| || || || || || ||| | || | || ||| || |||||| Sbjct 362457 TTATTCAGGTTCAGGGTAGCCTGATAGGTTA----CATCATATAATTTCTGATGATCAAA 362402 Query 69243 TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTC 69302 ||| | || ||||| | || || | || || || ||||| || || ||||| Sbjct 362401 CTCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTC 362342 Query 69303 AT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCC 69359 | | ||| | ||| | ||| || |||||||| || || || |||||| || || Sbjct 362341 GTCTTTGGAAGT---ATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCC 362285 Query 69360 CAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACC 69419 | ||||||||| || || |||| || || || || | | | | || || || Sbjct 362284 TAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCC 362225 Query 69420 AGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT 69479 ||||||||||| || || | ||| | ||||| | || || || ||| || Sbjct 362224 GGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAAT---GGTTTT 362168 Query 69480 ---GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAAC 69536 | ||| |||||||| || | ||||| |||||||| | || | Sbjct 362167 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCA 362108 Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596 ||| ||| ||| || ||||| ||||| | || ||| | | | || | || Sbjct 362107 ATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTAC 362048 Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTT 69655 | | |||| || || || | |||||| || ||| || | |||||||| | | || Sbjct 362047 CCTTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTT 361989 Query 69656 CTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 |||| || || || |||||| || || ||||| || | ||| | |||||||| Sbjct 361988 CTTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATG 361932 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG 69772 | || || || || || | | || |||||| ||| ||||| || | || | || Sbjct 361931 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 361872 Query 69773 CAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAG 69832 | || | ||| | ||| ||| ||| || | ||| ||||| | || ||||||||| Sbjct 361871 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 361812 Query 69833 AAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 ||||||| ||| | || || || ||| || || ||| || || ||||| ||| Sbjct 361811 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 361752 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 || ||| ||| |||| || || || || || || || || || || || || Sbjct 361751 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 361692 Query 69953 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAG 70012 || | || | ||| ||| |||||||||| | | || | ||||||||||| || | Sbjct 361691 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 361632 Query 70013 GAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 | | ||| || || ||||| ||| | ||| || || ||| |||| || ||| | Sbjct 361631 GGGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAA 361572 Query 70073 TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCG 70132 |||| | ||||| |||| || |||||||| |||| ||| || || |||||||| Sbjct 361571 TATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAA 361512 Query 70133 TTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGT 70192 ||| | |||||||| ||| || |||||||| || ||||||||||||||||| | | Sbjct 361511 TTTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGA 361452 Query 70193 ATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||| || || || |||||||| Sbjct 361451 ATCCAAAATCCCTGTCATAAATAAT 361427 >seq3533 Length=1137 Score = 187 bits (206), Expect = 3e-42 Identities = 409/608 (67%), Gaps = 15/608 (2%) Strand=Plus/Minus Query 39604 TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 |||| ||| | ||| || ||||| || ||||| ||||| || | ||| || | ||||| Sbjct 967 TTTATACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTT 908 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 ||||| || || || ||||||| ||| | || || | ||| | |||||| |||||| Sbjct 907 GGAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCA-CAAAAGC 849 Query 39724 TCCAGAA-AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782 | | | |||||||| || || || || |||||||| || | | || || || Sbjct 848 TGCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCG-AATGAA 790 Query 39783 TATCATTATGT-ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 | | | || ||||| | | ||||| || || ||||||||||| || || || Sbjct 789 CAAGAGTTGGTGATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACGGCGGGGATCGTC 730 Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 ||||| || || || || | ||||| | ||| |||||| ||||| || || || Sbjct 729 TCTATCGCGTTGAAAAGCTCCTGTTTCTTTGTGCTACTTTTAACGTATGTGTCGATCAAA 670 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 ||||| || | |||| || ||||| |||||||| |||||||| || || || || | Sbjct 669 AGACTGTAGGTCTCTGCGTGAATGTTCTCAATCGCGATCTGAAAGCCATAGAAGCAGCGG 610 Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || || | ||||||||||| || |||| || | ||| ||||| || || || Sbjct 609 GCCTCTGGTATTTGTACCTCAGACATGAATCGAGTGGCGAGATTCTCATTGACGATACCG 550 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT 40081 || |||||||| ||||||| |||| | ||||| | | ||| | ||||| | Sbjct 549 TCTGATGCGGCAAAGAATGCCAGCACATTGGTGATAAAGTGTCGTTC----GTTGTCATT 494 Query 40082 -------TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 || | ||| || || ||||| | | |||| ||| || |||||||| || Sbjct 493 GAGCTTGTTCTCCCAATCGTTCATATCAGAAGCCAAGTCTAATTCCTCTGCTGTCCAGAA 434 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAAC 40194 || || ||||| || |||||||| | |||||| || || || || || || | ||| Sbjct 433 TGAAGCTTCTGCTTTCTTGTACATATCCCATATGTCTGTATGTTTGATAGGGAAGAGAAC 374 Query 40195 AAATCTAT 40202 ||||||| Sbjct 373 GAATCTAT 366 >seq3128 Length=12816 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 87349 TTCCCAGACATAGTGGAATTCTGCGAATACATGGCAAACAATGGAAAAATAGTTATAGTG 87408 ||||||||| |||| |||| | ||| | |||||||||| || || | ||| ||||| Sbjct 1820 TTCCCAGACGTAGTACCATTCAGTGAAGAGTTGGCAAACAAAGGCAAGACAGTGATAGTA 1879 Query 87409 GCTGCATTAGATGGAACATTTCAACGAAAACCATTT 87444 || ||||||||||||||||| ||||||||||| ||| Sbjct 1880 GCAGCATTAGATGGAACATTCCAACGAAAACCGTTT 1915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686666432816280