Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq501 150 2e-31 seq3869 111 2e-19 seq12 87.8 2e-12 >seq501 Length=12468 Score = 150 bits (166), Expect = 2e-31 Identities = 83/83 (100%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 103763 TTATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 103822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4861 TTATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 4802 Query 103823 TAACCACTGAGCTAAGGGGCCGT 103845 ||||||||||||||||||||||| Sbjct 4801 TAACCACTGAGCTAAGGGGCCGT 4779 >seq3869 Length=8584 Score = 111 bits (122), Expect = 2e-19 Identities = 301/461 (65%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 14844 TTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTC 14903 ||||| || | ||||| || | ||||||| |||||| | || ||| |||||| Sbjct 4363 TTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTT 4422 Query 14904 TTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCA 14963 || | |||| ||| |||| || || |||||||||||||| || | || || || || Sbjct 4423 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCG 4482 Query 14964 CCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAA 15023 || || || || ||||| || || || ||||| || || ||||| ||||| || |||| Sbjct 4483 CCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAGAAC 4542 Query 15024 GGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATC 15083 ||||| ||| || || ||||||| | || ||| || ||||| Sbjct 4543 GGAATGCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCGCGAATG 4602 Query 15084 ATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTT 15143 |||||||||||||| || || || |||| | | || || | ||| | | Sbjct 4603 CGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGCTGGAG 4662 Query 15144 GCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGA 15203 | || || || |||| ||| ||||| || || | || || || || |||||| Sbjct 4663 GTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGAACTGA 4722 Query 15204 CGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCGAGTAGAT 15263 || || || ||||| | || | ||| ||||| || |||| || || | || || Sbjct 4723 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGAGATTTTAAAGGTGGAC 4782 Query 15264 ACAGCGTCATAAAAGCGAATAATATGCGCCAGACGATTTTC 15304 || ||||| || || || | |||| ||||||| |||| Sbjct 4783 ACCGCGTCGTAGAAACGCTTGATATAGTCCAGACGCGTTTC 4823 >seq12 Length=339259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 103770 GTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-A 103828 |||| ||| ||||| || ||||||||||||||| ||||||||||| ||| |||||||| | Sbjct 93102 GTGGGCCCAGCTGGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAACCAA 93161 Query 103829 CTGAGCTAAGGGGCCGTA 103846 |||||||| || ||||| Sbjct 93162 CTGAGCTATAGGCCCGTA 93179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505610338744280