Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq1687 185 2e-42 seq40 109 1e-19 >seq1687 Length=800 Score = 185 bits (204), Expect = 2e-42 Identities = 203/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36748 ATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 36807 |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 36808 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 36864 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 591 Query 36865 GCCACA------------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGAT 36906 |||| | | |||| |||||||||||| ||| || |||||| Sbjct 592 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 651 Query 36907 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36965 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 652 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 710 Query 36966 AAGCCTCCGTGCTGATGTTTCTGCTGGGCGT 36996 || |||| || |||| | ||||| ||| Sbjct 711 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq40 Length=14228 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 20078 AATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 20137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2858 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 2917 Query 20138 TAC 20140 ||| Sbjct 2918 TAC 2920 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 17787 ACTCCACCTTTTCATCAATCCAGTCCGCCAACCACTGCATCATTTCTCTGCGCTTAACG 17845 ||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||| || Sbjct 1187 ACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123811285083296