Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3381 118 9e-22 seq8653 114 1e-20 seq1351 111 1e-19 seq6392 100 2e-16 seq4240 96.9 3e-15 >seq3381 Length=12314 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||||| | | || | || ||| Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTCG 1336 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || ||||| | |||||||| || ||||| || || | |||||| ||||| | Sbjct 1335 AGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGG 1276 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||| || | | ||||| || || || |||| || Sbjct 1275 ATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTTT 1216 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| |||||||||||||||||| Sbjct 1215 CCGGTCAAAGTCTTCACAAAGATTTGCATA 1186 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| | | | |||| | || |||||||| || || Sbjct 927 GTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGACCATCCTCGAGCTGCTTGCCA 868 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | |||||| ||||| |||||| || Sbjct 867 GCAAAGATGAGACGCTGCTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTA 808 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | | ||||| || || || || | ||||| |||| ||| Sbjct 807 ACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAAGTC 748 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 747 TTAACAAAGATTTGCAT 731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || || |||||||| | | | | || | ||||| Sbjct 1167 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTACGACCATCTTCC 1108 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || || || ||||||||||||| || || || || | ||| || || || Sbjct 1107 AATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCCTTGTCTTGA 1048 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | | ||||| || ||||| || | ||| Sbjct 1047 ATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGAGTGATCGTCTTG 988 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || ||||| || |||||||| |||||| || || Sbjct 987 CCAGTGAGAGTCTTGACAAAGATCTGCATACCTCCT 952 >seq8653 Length=1535 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||| |||||||| | | | | || | || |||||||| || ||||| | Sbjct 2 TCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAG 61 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||| ||||| || || | ||||| ||||| ||||||| || | | | Sbjct 62 ATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTC 121 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| | | | ||||| || || || |||| ||||| || ||||| |||||| Sbjct 122 TCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCACA 181 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 182 AAGATCTGCAT 192 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||||| || | ||||| || || ||||| |||||||||| Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| || || || ||||| | || | ||| |||||||| || || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||||| || | | | || | |||||| | | | || || Sbjct 314 ATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACC 373 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | || || |||| || || |||||||||||||| Sbjct 374 TCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq1351 Length=12664 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || |||||||| |||||||| | Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || ||||| | ||||||||||| || || || || Sbjct 4870 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGA 4811 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| || | | | || | ||||| | | || || Sbjct 4810 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4751 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || ||||| || | || || || ||||| |||||||||||||||||| || Sbjct 4750 TCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCATACCT 4700 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | ||||||||| || | || || || |||||||| || ||||||| Sbjct 5158 CCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCA 5099 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || ||||| | ||||||||||| || || || || Sbjct 5098 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 5039 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | | || | ||||| | | | ||||| Sbjct 5038 ATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACC 4979 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | ||||| || || || || || ||||| |||||| || Sbjct 4978 TCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATACCT 4928 >seq6392 Length=4631 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 130766 AAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCG 130825 || || || |||| || || | | ||| |||||||| ||| | ||||| |||| || Sbjct 4320 AACTCGCCGGCCAAAACACGGCGACTGTAGATGTTGCTGGTGTATGGTTCGAAGGCCTCA 4379 Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTA 130885 |||||||||| ||||||| || | |||||||||||| ||| | | ||||| ||| Sbjct 4380 TTGTTGCCGAGGATTTGTGAGGTGGATGCGGTGGGCATAGGTGCGATCAGCAGAGAGTTA 4439 Query 130886 CGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945 || ||||||| || ||| | ||||| | | ||||| ||||| | | |||||| Sbjct 4440 CGCAGACCGTTGGTGACGATACTCTTCTTCAGTCCCTCCCAGTCCCAGCGGGCGGTAGGC 4499 Query 130946 TTGACATT 130953 |||||||| Sbjct 4500 TTGACATT 4507 >seq4240 Length=2116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || || |||||||||||||| Sbjct 1669 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAG 1610 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| |||||||| || ||||| | ||||||||||| || || || || Sbjct 1609 AGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 1550 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | |||| || Sbjct 1549 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACC 1490 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || |||| ||| || || ||||| |||||| || Sbjct 1489 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATACCT 1439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424788215528424