Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1043 116 1e-20 seq3533 104 7e-17 seq13335 91.5 5e-13 >seq1043 Length=1979 Score = 116 bits (128), Expect = 1e-20 Identities = 129/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| |||||| | ||||| ||||| | ||||| || | || ||||| ||||| || Sbjct 376 TTCGCCGAGCGTTTGGTCGCCTTTGCCGCTGTCGAGGGTATCTTCTTTAGTGGCAGTTTC 317 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || || ||||| ||| | || ||||| || | |||||||| || | || ||||| Sbjct 316 TGC-TCGATCTTTTGGCTCAAGAAGCGCGGTTTAATGCACGGCTTGTCGTTCTCGAACGA 258 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTA 443870 ||||||||||| |||||||||||||| |||||||| |||||| | || || Sbjct 257 GCTGATCAGTCGTGACGAGGGTTTGCACTGCGACTTTGCCTGTTTGCTGTA 207 >seq3533 Length=1137 Score = 104 bits (114), Expect = 7e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| ||| || | || || ||||||| ||| || || | || || |||||||||||| Sbjct 794 TTCGCCGAACGTTTGGTGGCATTTGCTGCGGTTGAGGGTATCTTCTTCAGCGGCAGCTTT 853 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 | |||||| ||||||||| || | || | |||| || || |||||| ||||| Sbjct 854 TGTG-CCATCTACTGGTTGAAGAAAAGGGGTTTAATGCCAGGCCTTACCTTTTCCAACGA 912 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||||||||||| ||||||||| | || |||||||| || || Sbjct 913 GCTGATCAGTCGTGACGAGGGTCTACACTGCGACTTTGCTTG 954 >seq13335 Length=4250 Score = 91.5 bits (100), Expect = 5e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 |||||| | ||||| || ||| || || || || || || || || |||||||| ||| Sbjct 2541 CCAATGCTGCGTGTCTTTAACGACACTGCACGTTATGTTGACCAGGGTGGCGGCAAGCGC 2482 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT--TGAACGGTT--TTT 255096 || || || |||||||||||||||| |||||||||||||| || | ||| || Sbjct 2481 AAGGGCGCCTTTGCCATCTACCTGGAGCCATGGCACGCCGACATCATGGA--GTTCCTTG 2424 Query 255097 ACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGT 255156 || ||| | | || ||||| |||||| || || |||||| ||| | ||| | Sbjct 2423 AC--CTGCGCAAGAACCACGGCAAGGAGGAGATGCGTGCTCGCGACCTCTTCTACGCACT 2366 Query 255157 CTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTG 255216 |||| || || ||||||||| ||||| || ||| |||| ||| | || Sbjct 2365 CTGGATCTCTGACTTGTTTATGCAGCGCGTTGAGGCCAACGCCGACTGGTCACTCTTCTG 2306 Query 255217 TCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCT 255276 || ||| |||| || || | |||| | ||||| || |||| | |||| || || Sbjct 2305 CCCGAACGAGGCGCCAGGCCTTGCCGACACCTGGGGCGAGAAGTTCAACGAACTCTACCT 2246 Query 255277 GGAGTACGA 255285 | ||||| Sbjct 2245 GCGCTACGA 2237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587761564884015