Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq1642 316 2e-81 seq22966 91.5 1e-13 seq501 86.0 6e-12 >seq1642 Length=16582 Score = 316 bits (350), Expect = 2e-81 Identities = 226/260 (87%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 58082 CTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCG 58141 || ||||| || ||||| ||||||||||||||||| ||||| || |||||||| |||||| Sbjct 14520 CTGCAGCTTATCAAAGAGCACGGCTGTAAAGCGGGCCTGGTGTTTAACCCGGCGACGCCG 14461 Query 58142 CTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAAC 58201 || || || ||||||||||| ||||| || ||||| ||||||||||||||||| || ||| Sbjct 14460 CTGAGCTACCTCGATTACGTGATGGATAAGCTGGACGTGATCCTGCTGATGTCGGTTAAC 14401 Query 58202 CCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGT 58261 || ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 14400 CCGGGCTTTGGCGGCCAGTCCTTTATTCCCCAGACGCTGGATAAACTGCGTGAAGTGCGC 14341 Query 58262 CGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTG 58321 | ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| | Sbjct 14340 CAGCGCATCGATGCGTCCGGCTACGACATCCGCCTGGAAGTGGATGGCGGCGTGAAAGCC 14281 Query 58322 AACAATATCGGCGAGATCGC 58341 | |||||||||||| ||||| Sbjct 14280 AGCAATATCGGCGAAATCGC 14261 >seq22966 Length=480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 ||| || || ||||| ||||| ||||||||||| || ||||| || || || ||||| Sbjct 357 CGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCCACTCCGCTGAGCGTGCTTGAGTACGT 416 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAG 58219 ||||||||| | || || | |||||||| ||| ||||| ||||||||||| ||| Sbjct 417 GATGGACAAAGTCGACATGGTGTTGCTGATGAGCGTCAACCCGGGCTTCGGCGGGCAG 474 >seq501 Length=12468 Score = 86.0 bits (94), Expect = 6e-12 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 59617 GCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCGAA 59676 || ||||||| ||| ||||||||||||||| ||||||| ||| || ||||||||||| Sbjct 11110 GCGCCCTTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 11051 Query 59677 TCCTGTAGGGTGTACCAAATAGTTAGCAGATTACTTA 59713 |||||||||| || ||| || | | || || ||||| Sbjct 11050 TCCTGTAGGGCGTGCCATTTAATAATCA-ATCACTTA 11015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471075328291960