Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq76 114 3e-21 seq360 111 4e-20 seq11225 104 6e-18 seq12700 82.4 2e-11 >seq76 Length=48202 Score = 114 bits (126), Expect = 3e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCA-- 41256 ||||| ||||| ||| |||||||||| || | ||| ||||| || || || || ||| Sbjct 1369 GGCAATGATCCGGAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCT--GCAGG 1426 Query 41257 TCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAAT 41316 | |||||| | ||||||||| || ||| || || |||| | || || ||||||| Sbjct 1427 TGGCCACATCAGAAAGCTGGCGTGACAAACAGACGGGGGAGATGCGGGAGCAGACGGAAT 1486 Query 41317 GGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAG 41376 |||||||||| || | ||||| ||||| || ||| | ||| | ||||| |||||||| | Sbjct 1487 GGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTGGCTGGTGAATATCTGCGCAAGG 1546 Query 41377 G 41377 | Sbjct 1547 G 1547 >seq360 Length=29890 Score = 111 bits (122), Expect = 4e-20 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 || || ||| | || ||||||||||| |||||||| || || || | | | || || Sbjct 27532 GACCCGGAAGTACGCTACATGCCAAGTGGCGGCGCTGTCGCCAACTTCACGCTGGCAACT 27473 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | ||| |||| || || |||||||| | |||||| || || || ||||||||| Sbjct 27472 TCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCGAGTGGCACCGC 27413 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 ||||| | ||||| || ||||| ||| | ||| | || || ||||| ||||| || Sbjct 27412 GTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAG 27353 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGG 41420 |||| |||||||||| ||||| || || || ||| Sbjct 27352 GTGTACATTGAAGGCCAGCTGCGTACCCGCAAGTGG 27317 >seq11225 Length=5908 Score = 104 bits (114), Expect = 6e-18 Identities = 196/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| || | |||||| ||| ||| || ||| |||| |||| || | | Sbjct 5306 AACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCCGAAC 5247 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||| ||| || | || ||| | | ||||| | ||||||||||| ||||| ||| Sbjct 5246 GGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCAGACC 5187 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 ||| || || | || | || || ||||||||||| || ||||||| ||| | || ||| Sbjct 5186 GGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGCCGAA 5127 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 || || | || || ||||| ||||| ||| || | | | ||||||| || || || Sbjct 5126 ATCGCGGGTGAGTATCTGCGAAAAGGGAGCCAGTGCTACGTCGAAGGCACTCTCCGCACC 5067 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 || | || ||| | | || || | ||||||||||| || ||| Sbjct 5066 CGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATC 5022 >seq12700 Length=2524 Score = 82.4 bits (90), Expect = 2e-11 Identities = 179/262 (68%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 ||| | ||||| ||| | || ||| |||| | ||| ||| || | || || || | Sbjct 192 GGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAACGCCGTGACCAACCTGAGTCTG 251 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | ||| |||| || || |||||| ||||| || |||| |||||| Sbjct 252 GCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAATGG 311 Query 41319 CACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG 41377 ||||| || ||| || ||||| ||| | ||||| || || | ||||||||||||||||| Sbjct 312 CACCGTGT-GTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGG 370 Query 41378 TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGT 41437 | |||| | ||| ||||||| || |||| | ||| | | || | ||| | Sbjct 371 TTCGCAGGTCTACATCGAAGGCAAGCTNNC--CGCG--AGTGGGAAAA--AGAC-GGCAT 423 Query 41438 TGATCGCTACACCACTGAAATC 41459 | || ||||||||||||||| Sbjct 424 CAAGCGTTACACCACTGAAATC 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133164948724872