Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13335 168 8e-37 seq11521 134 2e-26 seq271 113 5e-20 seq1043 107 2e-18 seq19281 105 8e-18 seq3843 95.1 1e-14 seq4933 91.5 2e-13 seq3533 91.5 2e-13 seq6392 86.0 7e-12 seq2691 86.0 7e-12 >seq13335 Length=4250 Score = 168 bits (186), Expect = 8e-37 Identities = 469/717 (65%), Gaps = 27/717 (4%) Strand=Plus/Minus Query 104119 GGATGACATTGACACGAAGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGA 104178 || || ||| ||| ||| | |||| || | || | |||||| |||| || || || Sbjct 2965 GGCTGCCATCGACTACAAGCGCGACTTTGATTATGACTTTTTTGGCTTCAAGACACTCGA 2906 Query 104179 GAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCAT 104238 ||||||||| || || || |||| | | | || || ||| ||||| | || Sbjct 2905 GAAGAGCTACCTGCAGCGCATCGACAACGAGATTGTCGAGCGTCCCCAGCACATGCTGAT 2846 Query 104239 GCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAA 104298 ||| ||| | ||||| || || || |||||||| | | | | | || ||||| Sbjct 2845 GCGTGTGTCGATCGGCATCCACGGCCGCGACATTGACGCCGCCATCCACACCTACGAGCT 2786 Query 104299 GATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAG 104358 | |||| | | |||||| || || || || || || ||||| | || || |||| Sbjct 2785 GCTGTCGCGTCGCCTGTTCACGCATGCCACGCCCACGCTGTTCAACTCGGGCACGCCAAT 2726 Query 104359 ACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTA 104418 ||||| ||||| |||||||| | | ||||| ||||| ||| | || ||||| Sbjct 2725 GCCCCAGATGTCGTCATGCTTCCTGGTGCAGATGAAGGACGACTCTATCGATGGAATCTA 2666 Query 104419 TGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGG------GAT 104472 | ||||| | | |||| || ||| |||| ||| || || || || | | Sbjct 2665 CGATACTCTGAAGCAGTGCGCATTGATCAGCAAGTCGGCCGGAGGCATCGGTTTGTCGGT 2606 Query 104473 GCACA---TCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACAAATGGTCAA 104527 ||||| ||| || | | | |||||| | || || || || ||| Sbjct 2605 GCACAAGATCCGTGCCGCGCG-----------CTCGTACATCCGCGGCACCAACGGTACC 2557 Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587 || | || | |||||||||| || || ||||||| ||| || || ||||| | || Sbjct 2556 TCGAACGGACTGGTTCCAATGCTGCGTGTCTTTAACGACACTGCACGTTATGTTGACCAG 2497 Query 104588 GCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 | ||| | || ||||| | | || |||| || |||||||||||||| || ||| Sbjct 2496 GGTGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTGGAGCCATGGCACGCCGACATC 2437 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCT 104703 |||||||||||||| |||| ||||| || | |||||| || |||| ||||| || Sbjct 2436 ATGGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGATGC-GTGCTCGCGACCT 2378 Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763 ||||| ||| |||||||| | || | || ||| || | ||||||| | | | | || Sbjct 2377 CTTCTACGCACTCTGGATCTCTGACTTGTTTATGCAGCGCGTTGAGGCCAACGCCGACTG 2318 Query 104764 GTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTT 104820 ||| ||||| || || || |||| || || || |||| || ||| ||| |||| Sbjct 2317 GTCACTCTTCTGCCCGAACGAGGCGCCAGGCCTTGCCGACACCTGGGGCGAGAAGTT 2261 >seq11521 Length=1534 Score = 134 bits (148), Expect = 2e-26 Identities = 253/371 (68%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 169136 CTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTA 169195 || ||||| |||| |||||||| |||| | | |||||||||||||||||| |||| | Sbjct 319 CTCGGCCAAAAGTGGTGAATCAAGTTGATGAGCAAACCCTTGATGTGGGAACCATCGTGA 378 Query 169196 TCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCC 169255 || ||| ||||||||||| ||| | || || || ||| || || | || ||| Sbjct 379 TCTTGATCAGTCATGATCATCAGATGGCCGTAGCGGAGCGACTTGACGTCGTCGTACTCC 438 Query 169256 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGA---TGTG 169312 || || || || ||||||| ||| | | | ||||| ||||| |||||| || Sbjct 439 TTGCCGTGCTGCAGACCCATGATGGTGACAATGTTGTTGATCTCTTCGTTTGACATTGAA 498 Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 | ||| | || || || |||||| ||| || ||||||||| ||| Sbjct 499 TCACGGGTGGCTGA---CTCACGCACATTCAGCAGCTTACCCTTGAGAGGGAAGCATCCG 555 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 ||||| || | || || || || ||| |||||||| |||||||| || || || ||| Sbjct 556 TAGTGGTCCCATCCCACCACACTGATACCGGCGACTGCCAGAGTCTTGGCAGAATCTCCC 615 Query 169433 TCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCC 169492 || || | ||| | ||||| | | |||| ||||| || ||| ||| || || ||| Sbjct 616 TCTGTCAAGATCAATGTACACTCGTCTGATTTGGCCGTTCCTGCCAAGTTTGCTTCGTCC 675 Query 169493 AATTTGGGAAT 169503 || ||||| || Sbjct 676 AACTTGGGTAT 686 >seq271 Length=183270 Score = 113 bits (124), Expect = 5e-20 Identities = 276/411 (67%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||| ||||| || || ||||| || | || ||| || | ||| || || Sbjct 17958 GACCTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTT 18017 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 ||||| ||||| | | | ||| ||||| || |||||||||||||| || Sbjct 18018 GGTCGCAGCGATCAGGATGACGCCT---TCATTGGCCTCGAAACCATCCATCTCGACCAG 18074 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC-CACCAGCACTGCGTT 9692 || ||||| | || ||||| ||||| ||||| || | | | ||| || | ||| | Sbjct 18075 CAGCTGGTTCAGCGTCTGTTCGCGTTCGTCATT-GCCGCCGCCCAGACCGGCGCCGCGAT 18133 Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGA 9748 | || || ||||| || || || ||||||| |||||| ||| ||| ||||| Sbjct 18134 GACGGCCGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCT 18193 Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 | ||| || | || || |||||| || || ||||| || ||||| || || ||| Sbjct 18194 G----TTCGAACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAG 18249 Query 9809 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | ||| | || | || ||| || ||||| | |||||| || ||||| || || || Sbjct 18250 TCGGAACCGG-AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAG 18308 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 ||| |||||||| ||||| || ||| |||| || | || || ||||| Sbjct 18309 AAGCGTCTTACCGGTACCGGGAGGACCGACGAGCAGCACGCCGCGCGGAAT 18359 >seq1043 Length=1979 Score = 107 bits (118), Expect = 2e-18 Identities = 206/302 (68%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA---G 94713 ||||| |||||| ||||| |||| || || ||| | | ||||||||| | | Sbjct 514 GAGACCTACAGTCTTCTCATCGACACCTACATCAAGAACA---CCGAGAAGAAGAACATG 458 Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| | || | || || | |||||||| || ||||| || Sbjct 457 CTCTTCCACGCCATCGAGACTATCCCCGCCGTTAAGAAGAAAGCCGACTGGGCCTTGCGC 398 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | || || | || || || || ||||| | |||| ||||| ||| ||| Sbjct 397 TGGATC---ACCAACGCTCGCTCATTCGCCGAGCGTTTGGTCGCCTTTGCCGCTGTCGAG 341 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 ||||||||||| ||| |||||| | || | ||||||||||||||| ||| | ||| Sbjct 340 GGTATCTTCTTTAGTGGCAGTTTCTGCTCGATCTTTTGGCTCAAGAAGCGCGGTTTAATG 281 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 94953 | || | | ||||| |||||||| ||| |||||||||||| | ||| || ||| Sbjct 280 CACGGCTTGTCGTTCTCGAACGAGCTGATCAGTCGTGACGAGGGTTTGCACTGCGACTTT 221 Query 94954 GC 94955 || Sbjct 220 GC 219 >seq19281 Length=570 Score = 105 bits (116), Expect = 8e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || | || || || || || ||||||||| | | | | | | Sbjct 351 ACATGCTGATGCGTGTCTCGATTGGCATCCACGGCACCGACATTGATGCCGCCATCCACA 292 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | ||| || | | || || || |||||| |||||| || |||||||| ||||| |||| Sbjct 291 CCTACAACCTGCTCTCGCAGCGTCTGTTCACTCACGCCACGCCAACCCTGTTCAACGCTG 232 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 | || || | || |||||||| |||||||| || | ||||||||||| ||| Sbjct 231 GCACTCCCATCCCTCAAATGTCGTCGTGCTTCCTCGTCCAGATGAAGGAGGACTCGATCG 172 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | || ||||| | ||||| | | |||| || | ||||| |||| ||||| || || | Sbjct 171 AGGGCATCTACGACACTCTCAAGCAGTGCGCTCTCATCTCCAAGTCTGCTGGTGGCATCG 112 Query 104469 G 104469 | Sbjct 111 G 111 >seq3843 Length=4024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 || || || ||| |||| || ||| || ||| || |||||||||||||| |||||| Sbjct 3376 AACTATCGTGAGGCTTATGGCATGTACGCTTGCAATGGTATCCTCTTCAACCACGAATCA 3435 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACAAATCATG 7480 ||| | |||| || |||||||| | ||||| ||| || | | | || | Sbjct 3436 CCGCGCAGAGGAGCTACTTTTGTCACCAGAAAGATCACCAAGTTTGTTGCTGCCACCAAG 3495 Query 7481 AAGGGTGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGCGAGAGATTGGGGTCA 7539 || | |||| | | || | | |||||| | || || | | ||||||||||| Sbjct 3496 CTCGGCAAGAAGG-GCACCCTGCTTCTCGGTAACTTGAATGCCAAGCGTGATTGGGGTCA 3554 Query 7540 CGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGAAT 7598 ||| |||||||| || || || |||||| | ||||| || ||||| |||||| ||||| | Sbjct 3555 CGCCAAGGACTACGTCGAGGCAATGTGGTTGATGCTCCAGCAAGA-GAAGCCAGACGACT 3613 Query 7599 ATGTAGTAGCAACGGGTGAGACCCA 7623 ||| | || || |||||||| || Sbjct 3614 TTGTCATTGCTACTGGTGAGACTCA 3638 >seq4933 Length=3897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| || | ||||||||||| ||||| | ||||||||| | || | |||| Sbjct 423 CTTTCCTACCGAGTCAATCTCATCGATGAAAATGATGCATGGCTCCTTGGACCTGGCGAG 364 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||||| | || || |||||||| || || |||||||| | |||| | ||| | | Sbjct 363 ATCAAACAACTCGCGCACACGCTTTGCACCGACACCAACGTATTTCTCGTCGAAGCTAGA 304 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | | | | || |||||| || | ||||| || ||||| || ||||| || || Sbjct 303 GCCAGTGGTGTAGAGGAAGGGAACGCCCGCCTCACCTGCGATGGCACGTGCGAGGAGGGT 244 Query 9874 CTTACCCGTACCTGGCTTACCCG 9896 ||||||||| ||||||| |||| Sbjct 243 CTTACCCGTTCCTGGCTCGCCCG 221 >seq3533 Length=1137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 |||| || || || || | | |||||||| |||||||||||||||||| || Sbjct 789 GTTCATTCGCCGAACGTTTGGTGGCATTTGCTGCGGTTGAGGGTATCTTCTTCAGCGGCA 848 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||| || || || || ||| | ||||| | ||| | |||||||| || ||| |||| Sbjct 849 GCTTTTGTGCCATCTACTGGTTGAAGAAAAGGGGTTTAATGCCAGGCCTTACCTTTTCCA 908 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||| |||||||||||| || ||| || ||||| Sbjct 909 ACGAGCTGATCAGTCGTGACGAGGGTCTACACTGCGACTTTGC 951 >seq6392 Length=4631 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 105797 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTC 105856 || |||||||| || || |||||| ||||||||| || ||||| ||| | || |||| Sbjct 4144 ATCGACATGGCAGCCGACCGTGGTGCCTTCATTGACCAGAGTCAGAGTTTCAACGTCTTT 4085 Query 105857 ATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGG 105915 || | || ||||| || |||||||| |||| ||||| | || ||||||||||| Sbjct 4084 ATCGCCGAGCCCAACTTTG-CCAAGCTCACTTCAATGCATTTCTATGCATGGAAGAAGGG 4026 Query 105916 TCTCAAAACGGGGATGTATTA 105936 ||| || || || ||||| || Sbjct 4025 TCTGAAGACCGGCATGTACTA 4005 >seq2691 Length=892 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || ||||| |||||||| || |||||||| | | | ||| || |||||||| Sbjct 407 GGCGTCGATCTCGTCAATGAACACAATGCATGGAGCACTCTTGCGTGCCTGCTCAAAGAG 348 Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || || ||||| || || || ||||| ||||||||||| ||||||| | | || Sbjct 347 GTCGCGAACACG--TGCCGGTCCGACACCGACAAACATCTCGACAAAGTCCGAACCAGAG 290 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | ||| || || || | ||| || ||| | || |||||| | ||||| || Sbjct 289 GTCGAGTAGAATGGCACGTTGGCTTCGCCAGCAGTTGCCTTGGCGAGCAACGTCTTTCCG 230 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 || || || || |||| |||||| ||||| |||||||||||| Sbjct 229 GTTCCAGGTGGTCCGATCAGGATGGCACCGCGTGGGATCTTGGCGCCA 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583055003717480