Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13335 242 4e-59 seq1043 181 1e-40 seq19281 149 7e-31 seq3533 129 6e-25 seq3843 111 2e-19 seq19 91.5 2e-13 >seq13335 Length=4250 Score = 242 bits (268), Expect = 4e-59 Identities = 481/699 (69%), Gaps = 15/699 (2%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG--AATCACCCTCAGATGTCGA 53330 || ||||| |||||||| || ||||||||| | || ||| ||| ||| |||||||| Sbjct 2769 TTCACGCATGCCACGCCCACGCTGTTCAACTCGGGCACGCCAATGCCCC--AGATGTCGT 2712 Query 53331 GCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 |||||||||||| ||||||||| ||||| ||||| || |||||||| || || ||| Sbjct 2711 CATGCTTCCTGGTGCAGATGAAGGACGACTCTATCGATGGAATCTACGATACTCTGAAGC 2652 Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGTCCGT 53449 |||| || ||| ||||| | | || || |||||| | | ||| | || ||||| Sbjct 2651 AGTGCGCATTGATCAGCAAGTCGGCCGGAGGCATCGGTTTGTCGGTGCAC-AAGATCCGT 2593 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || | ||| || || ||||| | | | ||| | || || ||||| Sbjct 2592 GCCGCGCGCTCGTACATCCGCGGCACCAACGGTACCTCGAACGGACTGGTTCCAATGCTG 2533 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || ||||| ||| |||| || || || || |||||||||| || ||||||||||| | Sbjct 2532 CGTGTCTTTAACGACACTGCACGTTATGTTGACCAGGGTGGCGGCAAGCGCAAGGGCGCC 2473 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||||||||| ||||| |||||||||||||| |||||||| || || ||||| | Sbjct 2472 TTTGCCATCTACCTGGAGCCATGGCACGCCGACATCATGGAGTTCCTTGACCTGCGCAAG 2413 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 || || || | || |||||||| ||| || ||||| || ||| || || ||||| | | Sbjct 2412 AACCACGGCAAGGAGGAGATGCG-TGCTCGCGACCTCTTCTAC-GCACTCTGGATCTCTG 2355 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 || | || ||||| || ||| ||| || |||| || | |||||||||||| Sbjct 2354 ACTTGTTTATGCAGCGCGTTGAGGCCAACGCCGACTGGTCACTCTTCTGCCCGAACGAGG 2295 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 || ||||| | || || ||| |||| ||||| | || | | |||| || Sbjct 2294 CGCCAGGCCTTGCCGACACCTGGGGCGAGAAGTTCAACGAACTCTACCTGCGCTACGAAG 2235 Query 53808 ---TTCAGGGCCGCTACAAGAAG-AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | |||| | || | | | ||||||| | || | ||| | |||||| Sbjct 2234 CGACACCCGGCCTC-GCACGCCGCACCATCAAGGCACAAGACCTGTGGTTCTCGATCCTC 2176 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || |||| | ||||| || || |||||||| |||||||| ||| ||| | ||| Sbjct 2175 GAGTCCCAGATCGAGACAGGCACCCCGTACATCCTATACAAGGACTCGTGCAATGGCAAG 2116 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||| ||||| ||||| ||| ||||||||| Sbjct 2115 TCCAACCAACAGAACCTCGGCACTATCTCGTCGAGCAAC 2077 Score = 145 bits (160), Expect = 8e-30 Identities = 300/439 (68%), Gaps = 17/439 (4%) Strand=Plus/Minus Query 55502 GCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCG 55561 || |||||||| ||||| ||||| | || ||| | ||||||||||| || |||||||| Sbjct 1539 GCTCCAATGCCCACCGCATCGACCTCCCAAATCCTCGGCAACAACGAAGCTTTCGAGCCA 1480 Query 55562 TACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAG 55621 ||||| | |||||| ||| || || || || |||||||| | | |||||||| Sbjct 1479 TACACCAGCAACATTTACAGTCGTCGTGTGCTTGCCGGTGAGTTCACCGTCGTCAACAAG 1420 Query 55622 CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA-ACCCGCAGATCAAGACGGATAT 55680 || || | ||||| || | || ||||| ||||| |||| |||| || || Sbjct 1419 CAGCTGCTGCAGGACTTGATGGCACTCGGTCTGTGGACACCCG-AGATGAAGAACGAGAT 1361 Query 55681 TGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCC-TCTGCGT----CTCAAGG 55733 | ||| | || || ||||| ||| |||||| || || || || | Sbjct 1360 CATTGCCAACCGTGGTTCGATCCAGGCGATC----GATTCCATCCCCGAAGACCTGAAAG 1305 Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793 || | ||| ||| ||||||||||| | ||| | ||||| || ||| || || | Sbjct 1304 AGCTGTACAAGACCGTGTGGGAGATCCGTCAGCGCACACTGATCGATATGGCGGCCGACC 1245 Query 55794 GTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT 55851 ||||||| | ||||||||| ||| || || ||| | || || | | || | Sbjct 1244 GTGGTGCTTTCATCGACCAAAGTCAGAGCTTC--AACGTGTTTATCGCCGAGCCAAGCTT 1187 Query 55852 GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTA 55911 |||||| | | ||||||||||||||| | |||||||||||||| ||||| || ||||| Sbjct 1186 TGCCAAGCTCACCTCGATGCACTTTTATGCCTGGAAGAAGGGACTGAAGACTGGCATGTA 1127 Query 55912 CTATCTGCGGACCCGCGCC 55930 ||| ||||| ||| | ||| Sbjct 1126 CTACCTGCGTACCAGAGCC 1108 >seq1043 Length=1979 Score = 181 bits (200), Expect = 1e-40 Identities = 391/577 (68%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | || || || | || |||| || ||||| ||||| | ||| Sbjct 218 GGCAAAGTCGCAGTGCAAACCCTCGTCACGACTGATCAGCTCGTTCGAGAACGACAAGCC 277 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||| | || |||||||| | ||||||||| | ||||| ||||| |||||||| Sbjct 278 GTGCATTAAACCGCGCTTCTTGAGCCAAAAGATCGAGCAGAAACTGCCACTAAAGAAGAT 337 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCA 74929 || |||||| ||||||||||| | || | ||||| | | || || ||||| Sbjct 338 ACCCTCGACAGCGGCAAAGGCGACCAAACGCTCGGCGAATGAGCGAGCGTTGGTGATCCA 397 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 | ||||| || ||||| || || || |||| ||| ||||| || |||||||| Sbjct 398 GCGCAAGGCCCAGTCGGCTTTCTTCTTAACGGCGGGGATAGTCTCGATGGCGTGGAAGAG 457 Query 74990 GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 | ||||| |||| | ||||| | |||| || | ||| ||| ||||| || Sbjct 458 CATGTTCTTCTTCTCGGTGTTCTTGATGTAGGTGTCGATGAGAAGACTGTAGGTCTCAGA 517 Query 75050 ATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 || || |||| || ||| ||| | | |||||| | || ||||||| ||||| | Sbjct 518 GTGGATGTTCTCGATG-GCGATTTGGAATCCATAGAAACAACGTGCCTCTGGGATCTGCA 576 Query 75109 CATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | || |||| | || | | |||||| |||| ||||||||||| ||||| || Sbjct 577 CCTCAGACATGAAGCGT--GTGGCAAGATTCTCGTTGACAATGCCGTCCGATGCGGCAAA 634 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTG---TCCCAATC 75223 || |||||||| |||||||||| ||||| | || | || ||| |||||||| Sbjct 635 GAAGGCCAGTACGTGAGTGATAAAGTGACGCTCGTTATCGTTCAGCTTGTTCTCCCAATC 694 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA-CTCCCAATCGCCTTTT 75282 | | ||| | |||| ||| ||||| ||| | ||||||||| | || | ||||| | Sbjct 695 GTGAATGTCGCTTGCCAGATCGATCTCTTCGGCTGTCCAGAAAGATGCCTCT-GCCTTCT 753 Query 75283 TGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||||| ||| | ||| |||| ||||| || || Sbjct 754 TGTACATGTTCCAAATGTCCGGGTGCTTGATAGGGAA 790 >seq19281 Length=570 Score = 149 bits (164), Expect = 7e-31 Identities = 192/265 (72%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || ||||||||||||||||||||||||||||| || |||||| |||||| Sbjct 265 TTCACTCACGCCACGCCAACCCTGTTCAACGCTGGCACTCCCATCCCTCAAATGTCGTCG 206 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| || ||||||||| ||||||||||| ||||||||||| || |||||| || Sbjct 205 TGCTTCCTCGTCCAGATGAAGGAGGACTCGATCGAGGGCATCTACGACACTCTCAAGCAG 146 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCG 53452 || || | ||||||||||| | ||||| |||||| || | | || ||||||| Sbjct 145 TGCGCTCTCATCTCCAAGTCTGCTGGTGGCATCGGTGTCGCCATCCACAAGATCCGTGCC 86 Query 53453 AACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 | || ||| || || |||||| || | || |||| || ||||| || Sbjct 85 TCGCGTTCATACATCCGTGGCACCAACGGCACATCCAACGGTCTCGTCCCCATGCTGCGT 26 Query 53513 GTCTTCAACAACACGGCCCGGTACG 53537 || ||||| |||| || || |||| Sbjct 25 GTGTTCAATGACACTGCTCGCTACG 1 >seq3533 Length=1137 Score = 129 bits (142), Expect = 6e-25 Identities = 332/495 (67%), Gaps = 17/495 (3%) Strand=Plus/Minus Query 74781 CTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAG 74840 || |||| || || ||||| | |||||| ||||| | || | ||||||||||| || Sbjct 921 CTGATCAGCTCGTTGGAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAG 862 Query 74841 ATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 |||||||| ||| || ||||||||||| || || || ||||| || || | ||| Sbjct 861 ATGGCACAAAAGCTGCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGT 802 Query 74901 TGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 | ||||| | | | || ||||| | | ||||| || || || || || Sbjct 801 TCGGCGAATGAACAAGAGTTGGTGATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACG 742 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT-TCTCTTCGGGATCC--TTGACG 75017 || |||| || || ||||| | ||| | ||| ||| | |||| | | | | || ||| Sbjct 741 GCGGGGATCGTCTCTATCGCGTTGAA-AAGCT--CCTGTTTCTTTGTGCTACTTTTAACG 685 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTA 75076 |||| |||| ||| ||| ||||| | ||||| ||| | ||| ||| | Sbjct 684 TATGTGTCGATCAAAAGACTGTAGGTCTCTGCGTGAATGTTCTCAAT-CGCGATCTGAAA 626 Query 75077 CGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA--AATTCA-TGTCGAT 75133 | ||||| | || ||||||| || |||| ||| || | ||| | || ||| Sbjct 625 GCCATAGAAGCAGCGGGCCTCTGGTATTTGTA---CCTCAGACATGAATCGAGTGGCGAG 569 Query 75134 ATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTG 75193 |||||| ||||||| ||||| || ||||| || || ||||| || | |||||||||| Sbjct 568 ATTCTCATTGACGATACCGTCTGATGCGGCAAAGAATGCCAGCACATTGGTGATAAAGTG 509 Query 75194 GCGCTCATCGTCAGTGAGTTTG---TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTC 75250 || || | |||| |||| ||| |||||||| |||| || ||||| || | || Sbjct 508 TCGTTCGTTGTCATTGAGCTTGTTCTCCCAATCGTTCATATCAGAAGCCAAGTCTAATTC 449 Query 75251 CTCGACCGTCCAGAA 75265 ||| | |||||||| Sbjct 448 CTCTGCTGTCCAGAA 434 >seq3843 Length=4024 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 158942 TAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT 159001 ||||||| || | ||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 3655 TAAACTCACGAACCGAGTGAGTCTCACCAGTAGCAATGACAAAGTCGTCTGGCTTCTCTT 3596 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | |||||||| | |||||| ||||||||||| |||| ||||||||||| || ||||||| Sbjct 3595 GCTGGAGCATCAACCACATTGCCTCGACGTAGTCCTTGGCGTGACCCCAATCACGCTTGG 3536 Query 159062 CATCCATGTTCCCGAG 159077 ||| || ||| ||||| Sbjct 3535 CATTCAAGTTACCGAG 3520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547 ||| |||||||||| | ||| |||||||| || |||| || || || || || || Sbjct 3659 TCGGTAAACTCACGAACCGAGTGAGTCTCACCAGTAGCAATGACAAAGTCGTCTGGCTTC 3600 Query 124548 GACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGC 124607 ||||| | ||| | |||||| || | ||||||||||| ||||| ||||| || ||| Sbjct 3599 TCTTGCTGGAGCATCAACCACATTGCCTCGACGTAGTCCTTGGCGTGACCCCAATCACGC 3540 Query 124608 TTGGCATCCAGGTTTCCGAG 124627 ||||||| || ||| ||||| Sbjct 3539 TTGGCATTCAAGTTACCGAG 3520 >seq19 Length=770976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55486 CAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAA 55545 |||||||||||| ||||||||||||||||| || || || |||||||| |||||||||| Sbjct 362806 CAACTCCCTGCTGGTGGCGCCAATGCCAACGGCTTCCACTTCTCAGATCCTGGGCAACAA 362865 Query 55546 CGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 ||| || ||||| ||||| | ||||| || Sbjct 362866 TGAGTGTTTTGAGCCTTACACTTCAAACATTTA 362898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547022921674600