Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8653 104 1e-17 seq1351 104 1e-17 seq3382 102 5e-17 seq4240 100 2e-16 seq13839 93.3 3e-14 seq3381 87.8 1e-12 >seq8653 Length=1535 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| ||||| || |||||| |||||||| || || || || || Sbjct 203 AGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCGAGAGTGCGA 262 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || |||||||| || ||||| ||||| || || || | || || Sbjct 263 CCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCT 322 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| || ||| | || ||||| || ||| || || | || Sbjct 323 TTGTCT-TGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACCTCTAGTGT 381 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| || ||||| Sbjct 382 GATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq1351 Length=12664 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| ||||||||||||||| || || || || || Sbjct 4921 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGT 4862 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | |||||| ||||| || || | |||||| Sbjct 4861 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCC 4802 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| | ||| || |||| || Sbjct 4801 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGT 4743 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || |||| || |||||||| || ||||| Sbjct 4742 GATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| ||||| || || ||| |||||||||||||||||| || | Sbjct 5158 CCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCA 5099 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || |||||||| || | |||||| ||||| || || Sbjct 5098 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 5039 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| || | || ||| | || ||||| || ||| || Sbjct 5038 ATTCCCTCCTTGTCT-TGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAAC 4980 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | || || || || |||||||| Sbjct 4979 CTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| ||||||||||||||| || || || || || Sbjct 4693 AGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGT 4634 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || |||||||| || ||||| || ||||| || || | |||||| Sbjct 4633 CCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCC 4574 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 4573 TTGTCCTGGATCTT 4560 >seq3382 Length=4522 Score = 102 bits (112), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| ||||||||| ||||| || || || || || || Sbjct 4170 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGA 4111 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || |||||||| || | |||||| ||||| || || | ||||||| Sbjct 4110 CCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCC 4051 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || || || | ||| || || | ||| Sbjct 4050 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGT 3992 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGA 34711 || || || ||||| | || || || ||||| |||||| |||| Sbjct 3991 GATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCATGATTGA 3947 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||||| |||||| || || || || || || || || || Sbjct 4398 AGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGA 4339 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || |||||||| || | ||| || ||||| || || | ||||||| Sbjct 4338 CCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCC 4279 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| | ||| || || | ||| Sbjct 4278 TTGTCCTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTCGAGGGT 4220 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 4219 GATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 >seq4240 Length=2116 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||||| |||||| || || || || || || || || || Sbjct 1432 AGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGA 1373 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || |||||||| || | ||| || ||||| || || | ||||||| Sbjct 1372 CCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCC 1313 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| || ||| || || | ||| Sbjct 1312 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCAAGGGT 1254 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | ||||| || ||||||||||| Sbjct 1253 AATAGTCTTACCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| |||||| ||||| || || || || || || || Sbjct 1660 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGA 1601 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | |||||| ||||| || || | ||||||| Sbjct 1600 CCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCC 1541 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| || || || || | ||| Sbjct 1540 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGT 1482 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || || |||||||| Sbjct 1481 GATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq13839 Length=228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| ||||||||||||||| || || || || || Sbjct 147 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGT 88 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | |||||| ||||| || || | ||||||| Sbjct 87 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCC 28 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 27 TTGTCTTGAATCTT 14 >seq3381 Length=12314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| |||||||| |||||||||||||| || || ||| || || | || || Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTCG 1336 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || |||||||| || | ||| || || || || || | |||||||| ||| | Sbjct 1335 AGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGG 1276 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || ||| | || || || | ||| || || | ||| || || || Sbjct 1275 ATC-TTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTT 1217 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||||||| || ||||| Sbjct 1216 TCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314621327804891