Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8653 145 7e-30 seq3382 129 5e-25 seq3381 129 5e-25 seq1351 114 1e-20 >seq8653 Length=1535 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| || |||| || ||| | || || || || || || || Sbjct 420 ATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTCT 361 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| ||||||||||||||||| || |||||||||||| Sbjct 360 GACACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAA 301 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| ||| | |||||| || || | ||| |||||| Sbjct 300 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAAC 241 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| ||||| | || || || || Sbjct 240 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTGCGTCTCCGTGGAGGAAT 191 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| |||| || || || || || || Sbjct 192 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTCGAGGTTGAGGGCTCT 133 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||| || || || || ||||||||||| Sbjct 132 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGATCAG 73 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || || || ||| | || |||||| Sbjct 72 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTCGGTGACTACAAC 13 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 12 ATTCAGAAGGAG 1 >seq3382 Length=4522 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||||||||| ||| | || || ||||| || || || Sbjct 3952 CATGCAAATTTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAGGGTTC 4011 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || |||||||| || || || |||||||| || Sbjct 4012 CGATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCA 4071 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||| || || ||||| ||| || ||| | || || ||||| Sbjct 4072 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAA 4131 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| ||| | || ||||| | ||| | || || || || Sbjct 4132 CATCCAAAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGTAT 4182 >seq3381 Length=12314 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || |||||||| || || || Sbjct 959 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACGATCACTCTTGAGGTTGAGGGCTCG 1018 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| ||||| || |||||||| || Sbjct 1019 GACACCATTGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCACCCGACCAG 1078 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || ||| | || |||||| Sbjct 1079 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGTACCCTCGGTGACTACAAC 1138 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || ||||| ||| | || ||||| Sbjct 1139 ATCCAGAAAGAGTCCACCCTTCACTTGGT 1167 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| ||| |||| || || || || || || Sbjct 1187 ATGCAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCG 1246 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || ||||| || || || || ||||||||||| Sbjct 1247 GATACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 1306 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||| ||| | || || || || || ||| |||||| Sbjct 1307 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAAC 1366 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || |||||| Sbjct 1367 ATTCAAAAGGAATCTACTCTCCACTTGGTT 1396 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||| |||| |||||| | || || || || || || || Sbjct 730 CATGCAAATCTTTGTTAAGACTTTGACTGGCAAGACCATCACACTGGAGGTTGAGGGCTC 789 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || || ||||| || || || || ||||||||||| Sbjct 790 CGACACTATTGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCCGATCA 849 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | || || || ||| | || ||||| Sbjct 850 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCGGTGACTACAA 909 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || || ||||| || Sbjct 910 CATCCAGAAAGAGTCCAC 927 >seq1351 Length=12664 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || ||||| || || || Sbjct 4932 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCT 4991 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || ||||||||||| || || || |||||||| || Sbjct 4992 GACACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAG 5051 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || || || || || ||| || ||| Sbjct 5052 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAAC 5111 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| ||| | || ||||| ||| Sbjct 5112 ATTCAAAAGGAGTCCACCCTTCACTTGGTATTG 5144 Score = 111 bits (122), Expect = 1e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || || || || ||| Sbjct 4476 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4535 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || || || |||||||| || Sbjct 4536 GACACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4595 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| ||| | || || | ||| | || |||||| Sbjct 4596 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAAC 4655 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || |||||| | ||| | || || || || Sbjct 4656 ATTCAAAAGGAGTCCACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGTAT 4705 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| | || ||||| || || || ||| Sbjct 4704 ATGCAAATCTTTGTGAAGACTCTAACTGGAAAGACCATCACTCTGGAGGTCGAGGGATCC 4763 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| || || || |||||||| || Sbjct 4764 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAG 4823 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || || | ||| | || |||||| Sbjct 4824 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTCGGTGACTACAAC 4883 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || ||||| | ||| | || || || || Sbjct 4884 ATTCAAAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGTAT 4933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434764944479040