Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq40 682 0.0 seq4 360 7e-95 seq3840 127 8e-25 seq501 111 6e-20 >seq40 Length=14228 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 23472 CATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCC-TCGACCAGG 23530 ||||||||| || ||||| || ||||| || || | || | | ||| |||| |||| Sbjct 5732 CATGACACCGGACATTATCCTGCAGCGTACCGGGATCGACGTGAG-AGCTGTCGAACAGG 5674 Query 23531 GCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGTTCACAATG 23590 | ||||||| ||||||||| | | ||||| || ||||| ||||||||||||||||| | Sbjct 5673 GGGATGATGCATGGCACAAATTACGGCTCGGCGTCATCACCGCTTCAGAAGTTCACAACG 5614 Query 23591 TGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACA 23650 ||||||||||||| || || || | || |||||||| | |||||||| |||||||||| Sbjct 5613 TGATAGCAAAGCCCCGCTCAGGAAAGAAGTGGCCTGACATGAAAATGTCCTACTTCCACA 5554 Query 23651 CCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCAT 23710 ||||||||||||| ||||| || || ||||| ||||||||||| |||||| |||| || | Sbjct 5553 CCCTGCTGGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAATGCTAAGGCGCTGGCCT 5494 Query 23711 GGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGATGTTACCG 23770 ||||||| || ||||| | || ||| | ||||| || || |||| | | || | | Sbjct 5493 GGGGAAAACAGTACGAGAACGACGCCAGAGCCCTGTTTGAGTTTACTTCCGGCGTGAATG 5434 Query 23771 TCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTCTCCCGACG 23830 | | ||| | || || || | ||| |||||||| ||||||||||||||||||||||| | Sbjct 5433 TTACTGAATCCCCGATCATCTATCGCGACGAAAGTATGCGCACCGCCTGCTCTCCCGATG 5374 Query 23831 GTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCGCGACTTCA 23890 |||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || |||| Sbjct 5373 GTTTATGCAGTGACGGCAACGGCCTTGAACTGAAATGCCCGTTTACCTCCCGGGATTTCA 5314 Query 23891 TGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCAGGTGCAAT 23950 ||||||||||||| || || || || || || ||| | |||||||||||||||||||| | Sbjct 5313 TGAAATTCCGGCTCGGTGGTTTCGAGGCCATAAAGTCGGCTTACATGGCCCAGGTGCAGT 5254 Query 23951 TCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCCACGCATGA 24010 |||||||||||| || || || ||||||||||| |||||||| |||||||| |||| Sbjct 5253 ACAGCATGTGGGTGACGCGAAAAGATGCCTGGTACTTTGCCAACTATGACCCACGAATGA 5194 Query 24011 AGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTG 24070 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 5193 AGCGTGAAGGCCTGCATTATGTCGTGGTTGAGCGGGATGAAAATTACATGGCGAGTTTTG 5134 Query 24071 ATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTG 24130 | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 5133 ACGAGATGGTGCCGGAGTTCATCGAAAAAATGGACGAGGCACTGGCTGAAATTGGTTTTG 5074 Query 24131 TATTTGGAGAACAATGG 24147 ||||||| || |||||| Sbjct 5073 TATTTGGGGAGCAATGG 5057 >seq4 Length=38681 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 |||||||| |||||||||||||| || || ||| || ||| ||||||||| |||| || Sbjct 2207 AAATACACTCTCATTTACGCAGACCCGCCTTGGGTATACCGTGACAAAGCAGCCGACGGC 2266 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 | ||||| || | || || |||||||| |||| | ||||| ||||||||||| || Sbjct 2267 GAGCGCGGCGCCGGCTTCAAGTATCCGGTTATGAACGTGCTGGACATCTGCCGCCTGCCT 2326 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 || ||||| ||||| ||||| |||||||| || ||||||||||||| || ||||| || Sbjct 2327 GTGTGGGATCTGGCTGCCGAAGATTGCCTGCTGGCTATGTGGTGGGTTCCAACACAGCCG 2386 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGATTA 30631 ||||||| ||||||||| | ||||||||||| ||||| ||| |||||||||| ||||| Sbjct 2387 ATTGAAGCGTTGAAGGTTATCGAAGCGTGGGGATTTCGCCTGATGACGATGAAGGGATTC 2446 Query 30632 ACCTGGAACAAATGCGGGAAAAGACAGACCGACAAGCTGGTCATGGGTATGGGTAGCACC 30691 |||||| ||||| ||| | || | | ||| | ||| || ||||| || Sbjct 2447 ACCTGGCACAAA---ACGAATAAGCACAAAGGCAACAGCGCCATCGGCATGGGACACATG 2503 Query 30692 ACTCGCGCTAACAGCGAAGACTGCCTTTTTGCAGTGAAAGGAAATCTGCCCGAACGCATT 30751 || || || |||||||||||||| || ||||| ||| || || ||||| | ||||| Sbjct 2504 ACCCGGGCGAACAGCGAAGACTGTCTGTTTGCGGTGCGCGGGAAACTGCCGGCGCGCATG 2563 Query 30752 AACGCCGGAATAATCCAGTCAT-TCACTGCACCGCGCCTTGATCACTCCCGCAAGCCGGA 30810 |||| || |||| ||| |||| || |||||||| || |||| ||||||||||| Sbjct 2564 GACGCTTCGATCTGCCAG-CATGTCACGGCGCCGCGCCTGGAGAACTCGCGCAAGCCGGA 2622 Query 30811 TATGGCTCGAGAAAAGCTTGTGCAACTTCTTGGCGATGTTCCCCGGATAGAACTGTTCGC 30870 || |||| ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 2623 CGTGATCAGAGAGAAGCTGGTGCAGTTGCTTGGCGATGTGCCGCGCATCGAGCTATTCGC 2682 Query 30871 CCGCCACACCTCGCATGGATTTGATGTATGGGGTAACCAATGCG 30914 |||||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 2683 CCGCCAGTCGTCGCATGGGTTTGACGTTTGGGGAAACCAGTGCG 2726 >seq3840 Length=990 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 2487 CCGGTTTCTTCCACCACCGCACCGGACAGGCGGCTTCGCGGGAAATCGCTCCCATCTCGT 2546 |||||||||||||||| ||||||||| | ||| || | ||| || | || | ||| || Sbjct 781 CCGGTTTCTTCCACCATCGCACCGGAAAAGCGACTATGAGGGTAACC-CTGCG-TCT-GT 725 Query 2547 GAAAAATGAGAAAACCCGGTGTGCATCGTTTTTGATTATCCCCGCACACTCACGCAGA-- 2604 | | | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 724 CAGCACAGT-AAAACCCGGTGTGCATCGTTTTTGATTATTCCCGCACACTCACGCAGAAG 666 Query 2605 TAA-----GGT--GGCTGCAGTCTCTGTTAATGCGGGAATACGGCGACGATACGGCGCA 2656 || || |||| | ||| ||||||||||||||||||||||||||| ||||| Sbjct 665 GAATTCCCCGTCGGGCTACGGTCATGGTTAATGCGGGAATACGGCGACGATACAGCGCA 607 >seq501 Length=12468 Score = 111 bits (122), Expect = 6e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 4859 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 4800 Query 10270 ACCACTGAGCTAAAGGGCCG-GGCGCAGGATAATAA 10304 ||||||||||||| |||||| |||| |||| |||| Sbjct 4799 ACCACTGAGCTAAGGGGCCGTGGCGAGGGATTATAA 4764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195124973031878