Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq17194 136 1e-27 seq8769 132 1e-26 seq9743 113 1e-20 seq13915 111 4e-20 >seq17194 Length=1719 Score = 136 bits (150), Expect = 1e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 2382 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2441 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 1478 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 1537 Query 2442 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2501 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 1538 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 1597 Query 2502 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2561 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 1598 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 1657 Query 2562 CCGGTACGGATGTTCCCTGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGA 2616 | || ||||||| ||| |||||| ||||| ||||| || | |||||||| Sbjct 1658 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGA 1712 >seq8769 Length=1584 Score = 132 bits (146), Expect = 1e-26 Identities = 287/426 (67%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 14895 CAGTACGTGCTTCGCGACGACTACATCCGCGGCCAGAGCGTGATCGAGATGAAGCTCGAT 14954 || ||||||| || || |||||| | |||||||| | |||||||||| ||||| ||| Sbjct 1165 CACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTGAT 1224 Query 14955 AGCCTGGCCACGAAACTGGAAAACGCGCAGTTGCGCGGCTTGGTAGGAGCAAACCATGCA 15014 ||||| || || |||| || || || || || || || || | Sbjct 1225 GCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGA----AGTAA----TGAA 1276 Query 15015 AACTGATATGGCCAAGATTCGCCGGGAATCCCTGCGCTGGCTGATTCTGCTGACCCTGAA 15074 | || ||||| | ||||||||||||||||||||| || | ||||||| | Sbjct 1277 CATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAGACCCTGGA 1336 Query 15075 CAACGCTCGACCGGTGGGTGCCTACGAAGGTCCGGTCCTTTCCGTGGCGCAGAGCGAGTA 15134 || | | || || || | | | | || | | || | ||| ||| || || Sbjct 1337 CACCTCGCGCCCCGTAGATCCTCATGAGGCTATCGTGTTGTCCACCATCCAGGGCATCTA 1396 Query 15135 TCCCGACGCGA-CACCACTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGACCGTGACC 15193 ||||||||| | ||||| ||||| | |||||||| || |||||| ||||||||||| || Sbjct 1397 TCCCGACGCCACCACCA-TGGAGCTGCGCCGCGAACTCGACTACCTGGCCGACCGTAGCC 1455 Query 15194 TGGTGACCCTGGTCAAGGAACCGTCCGGCAAGTGGTTCGCCGATTTGACCCGGTACGGCA 15253 ||||||| || | ||| | || ||| |||| || | |||||| ||||| Sbjct 1456 TGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGCCTGACCCACTACGGGG 1515 Query 15254 CCGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAGAAGTACT 15313 |||| | || || |||||||||| |||| |||| ||| | || || || | ||||||| Sbjct 1516 TCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCGACCAGAAAAGTACT 1575 Query 15314 GGTGAC 15319 |||||| Sbjct 1576 GGTGAC 1581 >seq9743 Length=5680 Score = 113 bits (124), Expect = 1e-20 Identities = 128/168 (76%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| || || || ||||| || || || || |||||||||||||||||||| Sbjct 1046 ATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGGCA 987 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || || ||||| ||||| || || || ||| || || | || ||||| |||||||| || Sbjct 986 GACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCTTC 928 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367 ||| ||| |||||| | || |||||| |||||| || ||||| || Sbjct 927 GGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGATCACGCCGG 880 Score = 86.0 bits (94), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 167 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 108 Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 107 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 48 Query 29264 AACATGGTCAAGGCGCAGAAGAAGGCAGAC 29293 ||||||||||||||||| |||| ||| Sbjct 47 GGGATGGTCAAGGCGCAGAAAGAGGCCGAC 18 >seq13915 Length=671 Score = 111 bits (122), Expect = 4e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 16381 GCCCTGAGCAGCCGGCCGAGCAACCTGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAG 16440 || |||| ||| || ||| |||||||||||||| ||||||| || ||||||||||| Sbjct 169 GCGCTGACCAGTCGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAA 228 Query 16441 GCGGCGTTCCACGAGTCCCTGGAGGAACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGG 16500 || |||||||| | | | ||| || |||||||| || ||| |||| ||| ||| ||| Sbjct 229 GCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGG 288 Query 16501 GGTAACAAGGTCCGCCTGATCAGCACCCACAACGGC 16536 || | |||| |||||||||||||| ||||| Sbjct 289 GGCGGTGAAGTCCATGTGATCAGCACCCACGACGGC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126533572278570