Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq3869 226 3e-54 seq1762 109 5e-19 >seq3869 Length=8584 Score = 226 bits (250), Expect = 3e-54 Identities = 305/425 (72%), Gaps = 0/425 (0%) Strand=Plus/Plus Query 24285 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 24344 ||||||||| || ||| ||| ||| || | |||||| |||||||| || ||||| || Sbjct 2572 GATGTCGTCGAACACGGTCGCCGGGTCGTTGACGATGTTGCGGATGATGTGAGTGTACGA 2631 Query 24345 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 24404 || ||||| || ||||| ||| ||||| || |||||||| || ||||| | | Sbjct 2632 ACGCGAGTGAATGGTCTCGGAGAAGGCCCAGGTTTCTACCCAGGTCTCCAGCTCCGGGAT 2691 Query 24405 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 24464 ||| | | ||| |||| | | ||||| | ||||||||| | || || || || | Sbjct 2692 GGAGATCAGCGGCAGCAACGCCACATTCGGGCTACGGCCCTGGATGGAGTCGAGCAGCGT 2751 Query 24465 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTC 24524 |||||||||||||||||||||||| || || || || || |||||||| | |||||| Sbjct 2752 CTGGTACTTCAGGTTGCTGATGAAAATATGTTTTTCATGTTCCGGCAGCGCCTGGTAGTC 2811 Query 24525 GATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTC 24584 ||| || || |||| |||| ||| |||||||| ||||||||||| | || ||||| || Sbjct 2812 GATGCGATCGCGGGAAACGTCAACCTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTC 2871 Query 24585 GATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTC 24644 |||||||| || || || ||| ||| ||||| || ||||| | ||||| | || Sbjct 2872 AATCAGCTTTTCAAAGATGTCGTATTTTTGCTGATCGTAGCGGGCCACGTTAACCGGCTG 2931 Query 24645 GCCGAGGAACATCGGCTGAGTCAGGAAATCGAATTTGTTCTGGTTGAAAGTGCTGTAAGA 24704 ||| | ||||| || | ||| |||| ||| |||| |||||| |||| | Sbjct 2932 GCCAAAAAACATAGGTTCCAGCAGCTGATCGTTTTTCGTCTGTGAAAAAGTGGTGTATGC 2991 Query 24705 CATTG 24709 ||||| Sbjct 2992 CATTG 2996 Score = 149 bits (164), Expect = 6e-31 Identities = 467/709 (66%), Gaps = 31/709 (4%) Strand=Plus/Plus Query 25324 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 25383 || || ||||||| ||||| |||| ||||| ||||| || |||||| | |||||| Sbjct 3466 CGCGGCGGCTCAATGCCGTTGGTGGCGTTGGAGATCTGCGACGAGGTCTCGGACGGCATC 3525 Query 25384 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATG---TCGATACGCAGCTTT 25440 | | ||| ||||| ||||| ||||| || ||| | ||| ||| |||| | Sbjct 3526 AGTGCGGAGAGCGTTGAGTTGCGCAGGCCGTGAGTTTTAATGGACTCG---CGCAATGCT 3582 Query 25441 TCCCAATCCATCTTCAGT--TTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGT 25498 ||||| || | ||| ||||| || || ||| || | |||||||| || | Sbjct 3583 TCCCAGTCGTAGTGCAGGGGTTCGC--TGACGATGCCGTCCAGATCTTTCTTATAGGTAT 3640 Query 25499 CGATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTT 25558 |||||||||| |||||||| | || ||||| |||| ||| || ||| | | Sbjct 3641 CGATCGGCAGGATGCCCTGCGCATAGGTGGTTTCGTTGAACCACGGGCAGGCGCCTTGCT 3700 Query 25559 CTTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTGGAATGCTTCAGCCAGTTCGT 25618 | | ||||| || || || | |||||| || ||||| | ||||| | || || Sbjct 3701 CGATAGCCAGCTCGTTAGAGGCCTTCAGCAGATAGTACTGAATCGCTTCGAACGTTTTGT 3760 Query 25619 GAA-CAGCATTT----GCTGCACGAGGATCGCTGTACTTCAGGCCACGCTTCGCCAGGTA 25673 | ||| | | ||||| || ||| ||| |||| |||||||||| || Sbjct 3761 GCGTCAGGTTGTTGGCGCTGC-CG----TCGGAGTAGCGTTTGCCATGCTTCGCCAGATA 3815 Query 25674 ATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT--CTTCTCT-GC 25730 || || |||||| || ||| |||||||| ||||| ||| | | | | | || Sbjct 3816 GTAAGCGAAGTTGATCACGCCGATACCCAGCGTACGACGCCCCATCGCGCCGCGTTTAGC 3875 Query 25731 CGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACCAGT-GTAC 25789 |||| | | || || | |||||| || | ||| ||||| ||||| ||| | || Sbjct 3876 CGCCGGGATGGGGTAATCCTGATAGTCGAGCAGCGCATCCAGAGCACGCACCGCCAGCAC 3935 Query 25790 GGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAG 25849 | ||| ||| || || || || | || | |||||||||| ||| ||||| | Sbjct 3936 TGCCAG-CTCTTCCAGCTCGTCGAGGCTGTCGATAGCCCCGAGGTTGAAGGCCGACAGGG 3994 Query 25850 TACACAGGGCCACTTCCCCCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGTCG 25909 | ||||| || | ||| || || |||| || || | || | ||| | |||| Sbjct 3995 TGCACAGCGCGATTTCGCC---GTT-TTCG--TCGTTGACATCTTCCAGCGGTTTGGTCG 4048 Query 25910 GCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAACG 25969 |||| || || |||| ||||||||| ||||| ||||||||| | | || ||||||| Sbjct 4049 GCAGAGCAATCTCCAGGCACAGGTTAGACTGACGCACCGGGGCGACTACCGGATCGAACG 4108 Query 25970 GGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 26018 |||| | |||||||||||||| |||| ||| | || || ||||| || Sbjct 4109 GGCTGTGGGTGTTGCAGTGGTCGACGTTCTGGATATAGATGCGGCCGGT 4157 Score = 143 bits (158), Expect = 3e-29 Identities = 269/390 (69%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 23776 AGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCT 23835 ||||| ||||| |||| || | ||||||||| |||| ||| | || ||| || Sbjct 2030 AGGCCCACCGCCTGCATGCGGATATTGGTGATGTACTCGACGTACTGGCAGAGAATATCT 2089 Query 23836 TTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTGC 23895 || ||||||||||||||||| ||||| ||||||| || |||| |||||||||||| Sbjct 2090 TTATTCAGGCCGATCATCGAGCCGTCGCGGAACAGGTAGTCCGCCCACTCTTTCTCCTGC 2149 Query 23896 ACCGATGCGTCGATAAAGCCCTGTCGT-GC-CTCTTCGTAGCAATCTTCTGCCACACGTG 23953 || || | || | ||| | || ||| | | ||| ||||| || | | Sbjct 2150 TGCGCCGCCAGCACGAA--CAGGTCATAGCACTCCTGCTTGCACTCTTCGGCGATTTCCG 2207 Query 23954 CAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGA 24011 | | | || | | ||| | ||| ||| |||||||||| ||| || |||| Sbjct 2208 CCATTTCCGG--ATCGTCGCTGCCGGAGCGCAGCAGGTTCAGCATATGCTGGGTGCCGGT 2265 Query 24012 CAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTAC 24071 || |||| |||||||| || || ||||| ||||| |||| ||| || ||| | Sbjct 2266 CAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTTGGCGTTGCCTTCCATCAG 2325 Query 24072 GCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 24131 ||| || | || |||||||||||||||||||| |||||||| |||||||||||||| Sbjct 2326 TTTGCGTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 2385 Query 24132 TGCATTGATGTTGTGCAGACACAGATACAG 24161 ||||| | | | ||| |||||||| || Sbjct 2386 GGCATTAACGCTCATCAGGCACAGATAGAG 2415 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26197 CCCTGCTGGAGGCGAGAGTACAGCATTTTGTTCAACTGAAGCCCGTAGTCCACATGGCGA 26256 |||| | | || || | ||||| || ||||| | ||| | ||||||||||| || ||| Sbjct 4333 CCCTTCAGCAGACGGGTGTACATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGA 4392 Query 26257 GCACGAGTGCTCTCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTTTCAAAATCCCAG 26316 | || || || |||||||||||||| |||||||| | ||||||||| | ||| Sbjct 4393 ACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGA 4452 Query 26317 TGCCACATCGGATAAAA 26333 |||||||| || || || Sbjct 4453 TGCCACATTGGGTAGAA 4469 >seq1762 Length=3150 Score = 109 bits (120), Expect = 5e-19 Identities = 232/339 (68%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 16682 CCGCCGTATGGGTCGATGTATTCCCCGGTCTCCAGATCCTTTGCGATCGCATTAATGGTC 16741 |||||||| |||||||| ||| | | ||| || |||| |||| || || | ||| Sbjct 1196 CCGCCGTAGGGGTCGATA-ATTGCGCCGTCGGCA--TCCTGGGCGAGGGCGTTGACCGTC 1252 Query 16742 AAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG-CTGAACATCACCTCGAA 16800 | ||| ||||| || ||| |||||| ||| || || ||| | | | | || | || Sbjct 1253 AGGTCGCGGCGCAGCAGATCGGCTTCGAGGGTGACGTCCGGGGCGGCATAGCAGGTA-AA 1311 Query 16801 ATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGGGCGTACTCTTCCTTGGT 16860 | || || || ||||| | | |||||||| ||||||||||| ||||||||| | | Sbjct 1312 ACCGGTATAGCCCGCGCCGGATTTGCGCTCGGTGCGGGCCAGGGCATACTCTTCCCGGCT 1371 Query 16861 CTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCGAAGCC-GAGTGCCATCA 16919 | ||||| ||| | || || || || || || || | |||| | || | | || Sbjct 1372 TTGCGGATGGAGGAACACGGGAAAATCGCGGCCTACCTGTTGATAGCCCGCGT-CTAGCA 1430 Query 16920 TCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTTGCTCTCAACACCCATCA 16979 ||| || |||||| ||| ||||| || |||| ||||||||| | | || | || Sbjct 1431 TCTGTTGCGGGGTGGCGCCCACCACCACCCAGTCTCGGTCTTTGACCGGCAGCCCTAACA 1490 Query 16980 GTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCA 17018 | | || || |||||||| ||||||||||| | |||| Sbjct 1491 GCGCGTCACGCACCGCGCCACCGACCAGATAACTCTTCA 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478845385756640