Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq40 686 0.0 seq4 354 3e-93 seq1687 230 9e-56 seq3840 127 8e-25 >seq40 Length=14228 Score = 686 bits (760), Expect = 0.0 Identities = 560/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 5057 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5116 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 5117 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 5176 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 5177 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 5236 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 5237 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 5296 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 || |||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 5297 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 5356 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || Sbjct 5357 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 5416 Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041 || || | ||| | || | || | | |||| ||||| ||||| | ||| || | Sbjct 5417 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 5476 Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101 || || || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 5477 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 5536 Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 5537 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 5596 Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 5597 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 5656 Query 12222 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 12280 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 5657 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 5715 Query 12281 TAATTTCTGGTGTCATG 12297 |||| || ||||||||| Sbjct 5716 TAATGTCCGGTGTCATG 5732 >seq4 Length=38681 Score = 354 bits (392), Expect = 3e-93 Identities = 395/524 (75%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 3099 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3158 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 2726 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 2667 Query 3159 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3218 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 2666 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 2607 Query 3219 GATCAAGGCGTGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3277 || ||||| || || |||| ||| |||| || |||| ||||| | ||||| Sbjct 2606 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 2548 Query 3278 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3337 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 2547 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 2488 Query 3338 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3397 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 2487 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 2431 Query 3398 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3457 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 2430 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 2371 Query 3458 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3517 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 2370 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2311 Query 3518 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3577 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2310 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2251 Query 3578 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 2250 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2207 >seq1687 Length=800 Score = 230 bits (254), Expect = 9e-56 Identities = 210/263 (80%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 541 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 600 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||| Sbjct 601 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 660 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || |||| |||||| ||| ||| ||||| |||||| |||||||||||| |||||||| Sbjct 661 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 720 Query 31876 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTG 31935 | || |||||||||||||||| || ||| |||| || ||| | || | ||| Sbjct 721 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG--TCAGT-CAGTG 777 Query 31936 CGTGAAGCCACCGGCACCTCCGG 31958 |||||||||||| | ||||||| Sbjct 778 CGTGAAGCCACCACCGCCTCCGG 800 >seq3840 Length=990 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 33142 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 33193 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 607 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 666 Query 33194 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 33252 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 667 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 725 Query 33253 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 33311 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 726 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200929253221364