Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq2516 271 8e-68 seq2261 159 4e-34 seq3869 156 4e-33 >seq2516 Length=21774 Score = 271 bits (300), Expect = 8e-68 Identities = 164/173 (95%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| ||||| ||||||||||||||||||| |||||| |||||||||||| Sbjct 1951 TCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCGT 1892 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1891 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 1832 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1831 TCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 1779 >seq2261 Length=3986 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||| ||||| | ||||| || |||||||||| ||||||||||| || ||||| Sbjct 674 GTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAACGTACG 615 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 |||||||| || ||||| |||||||||||||||||||||||||| | || | |||||| Sbjct 614 GCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCG 555 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 ||||| |||| || || ||||| ||||||||||||||||| ||||| || Sbjct 554 AGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTCGAT 502 >seq3869 Length=8584 Score = 156 bits (172), Expect = 4e-33 Identities = 380/571 (67%), Gaps = 5/571 (1%) Strand=Plus/Plus Query 128633 CATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACC 128692 |||||| || || ||||| || || || || | ||||||| ||||| | || ||| Sbjct 4353 CATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACC 4412 Query 128693 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 128752 |||||| || || || || ||| |||| ||||||| ||||| ||||| ||| | || Sbjct 4413 ACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAG 4472 Query 128753 TGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 128812 || |||||||| || || || ||||| || ||||||||||| || || || ||||| || Sbjct 4473 GGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATG 4532 Query 128813 CTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTC 128872 ||| |||| ||||| || || || | |||| ||| | || || Sbjct 4533 CTTGTAGAACGGAATGCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAG 4592 Query 128873 TGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAAT 128932 || ||||| || || || || || || || || |||| | |||||| ||| Sbjct 4593 CGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAAT 4652 Query 128933 TGACGCAGCAGCT-TCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATG 128991 | ||| | || | |||| || |||| || || || |||| || || | |||||| | Sbjct 4653 CG-CGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGG 4711 Query 128992 AACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCT 129051 | || |||||||| || || ||||| || || ||||| || || || |||| || || | Sbjct 4712 AGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGAGATTT 4771 Query 129052 TTTTAGTAGAAACTGCATCATAGAAACGAATAACGTTTGCCAAACGATTTTCGCCATCAT 129111 | || || || || || |||||||| | | | ||| ||| |||||| || Sbjct 4772 TAAAGGTGGACACCGCGTCGTAGAAACGCTTGATATAGTCCAGACGCGTTTCGCGCGGAT 4831 Query 129112 -CTTGGTG--CAAGCACATACCGATCAGCATAAAGGCAAACTGTGGGGTTTCATACAATT 129168 || | | || ||| ||| ||| ||| || ||||| | | | ||||| | || Sbjct 4832 AGTTCGAGAACAGGCAAGCGGCGACCAGAATATAGAGGAACTGCGCGCTCTCATAAATTT 4891 Query 129169 CACCAGTGTGACGGTCTTTTACGAGATACTT 129199 | || ||| |||| || ||| |||||||| Sbjct 4892 CGCCGGTGACGCGGTTTTGTACCAGATACTT 4922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531885864481160