Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq40 1728 0.0 seq1687 127 5e-25 >seq40 Length=14228 Score = 1728 bits (1916), Expect = 0.0 Identities = 1623/2060 (79%), Gaps = 11/2060 (1%) Strand=Plus/Plus Query 25997 TGCGTCATCGCCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCT 26056 ||||||||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 5047 TGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTT 5106 Query 26057 TTTCGATAAATTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAA 26116 ||||||| || ||||| ||||| |||| || | |||||| || || || ||||||| Sbjct 5107 TTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAA 5166 Query 26117 CAACCACGTGGTGGATACCTTCTCGTTTCATGCGCGGGTCATAATTCGCGAAATACCATG 26176 | || || | || | ||||| || ||||| || |||||||| || || || ||||| | Sbjct 5167 CCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGG 5226 Query 26177 CATCTCTCCCGGTTACCCACATGCTGAATTGCACCTGGGCCATATAGGCGGATTTGATAG 26236 ||||| | | || |||||||||||| | |||||||||||||| || || || || || | Sbjct 5227 CATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGG 5286 Query 26237 CCTCGAAGCCGCCAAGCCTGAATTTCATAAAGTCGCGAGAGGTGAAAGGGCACTTCAACT 26296 ||||||| || || |||| ||||||||| || || || ||||| || ||||| |||| | Sbjct 5287 CCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTT 5346 Query 26297 CAAGACCGCGGCCATCACTGCACAGGCCGTCAGGAGAACAGGCGGTACGCATGCCCTCGT 26356 |||| ||| ||| |||||||| | || || ||||| |||||||| ||||| | |||| Sbjct 5347 CAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGT 5406 Query 26357 CACGGAAAAGGATCGGCGACCCGGTGACCTTCACGTCAGTGGTGAACTCAAACAGGGTGC 26416 | || | | |||||| || | || || |||||| | | || ||||||||||||| | Sbjct 5407 CGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTC 5466 Query 26417 GAGCATCGTCCTCATACTGTTTCCCCCAGGCCAGCGCCTTGGCGTTAACTTCCGGTGCCA 26476 || |||| ||| |||||||| ||||||||||||||||| || ||||||||||| |||| Sbjct 5467 TGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCA 5526 Query 26477 CGCCGGTGCAAACTTCGGCAAGAAGGGTGAGAAAGTAGGACATCTTCATATCAGTCCACT 26536 | ||||||||||| || || || |||||| | ||||||||||| ||||| |||| ||||| Sbjct 5527 CACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACT 5586 Query 26537 TCTTGCCCGACTTTGGCCTGGAAATGACGTTGTGAACTTCGGAAGCAGTGATGACACCGA 26596 |||| || || ||| | | || |||||||||||||| ||||| |||||||| |||| Sbjct 5587 TCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGA 5646 Query 26597 GGCGTAGACGGTGCCACGCGTCATCACCTTGCTCGATGTTGCTAACGTCAATACCTGTAC 26656 | |||| |||||| || ||||| || || |||| || ||||| || || |||| Sbjct 5647 GCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTAC 5706 Query 26657 GAGCCAGGATAATTTCTGGTGTCATGCTTCCACCTTCTGTTCTGCAGCTTTCTGTTTCAG 26716 | ||||||||| || ||||||||||| |||||||||| || | |||||||||||||| Sbjct 5707 GCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAG 5766 Query 26717 GAATCCGAGGGCTTTCACTGCTTCGATTTGCGTAAGATCTGACGATGCACCAATATCGCG 26776 |||||| || ||||||||||||||| || || || ||||||||||| | ||| ||||| Sbjct 5767 GAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCG 5826 Query 26777 GCGGAAGATTTGGGAGCAGAGCGGCAGCAGATCGTCATCCCATGTTTTATTCATGGTGAT 26836 ||| || || ||||| |||||||||| | ||||||||||||||||||| || || ||| Sbjct 5827 GCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGAT 5886 Query 26837 CAGCAGATCATTAATTTCCCGCATGGTTTCATCGCTAACCGGAGTGATGTCGCGTTCCGG 26896 ||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 5887 CAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGG 5946 Query 26897 CTGGCGATCTGTGGTATACGTGGTATTTTCGACAATGCGTTCGGCCTCATCCTTGTCGTA 26956 ||| || |||| || || | |||||||||||||||||| ||||| ||||||||||| || Sbjct 5947 CTGACGTTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATA 6006 Query 26957 GATGCCTGCGAAACCGAAGGCAAGACGGGCGCACTGGATCATTGCTTTGTGTCGCAACAT 27016 ||| || || || |||||||| |||||||| ||||| ||||| ||||| || || ||||| Sbjct 6007 GATACCAGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACAT 6066 Query 27017 CCGTTTGGGATGTGACTGCCACGGTCCAGTAATCTCACGACCATCACGGGTTTTGAATGG 27076 |||||||||||| |||||||||||||| || || || | || || |||||||||||||| Sbjct 6067 CCGTTTGGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGG 6126 Query 27077 TTCCCGGCGACATTCATCCATCCATTCGGTAACGCAGATCGGATGGTTACGGTCCTTACG 27136 ||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||| || Sbjct 6127 TTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCG 6186 Query 27137 GTAAATCCTGCATGTACATGATTCGTTATCCTGCTCAAAATCCATACCGTCAAACTGCTG 27196 |||||||| |||||| || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct 6187 GTAAATCCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTG 6246 Query 27197 GTTTTCGTTGATGATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTG 27256 |||||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| Sbjct 6247 GTTTTCATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTG 6306 Query 27257 CTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGGATTAAGACCGTACTGGTTGGCGAC 27316 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6307 CTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGAC 6366 Query 27317 TATCAGTAGCGCAATAAACTGCGCATCACTGGCGTCACCTTTAAAAGCTGTCTGGCGCAA 27376 ||||| | || || ||||||||||| ||||| || |||||||| || |||||||| | Sbjct 6367 GATCAGCAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAG 6426 Query 27377 TGTGGTGATCAGTTCCTGCGGATCTACAGAATCCATTCCTACACGTTCTGCCAGCTTTCC 27436 ||||||||||||||||| || || ||||||||||| || |||||||| |||||||| || Sbjct 6427 AGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCC 6486 Query 27437 TGCCAGTGTTGCGAGTGCTGTGCTCATTTGTCTTATTCCTCTGATTCAATATCAATTTGA 27496 ||||| |||||||||||||| ||||| || |||| ||||||| |||||||||| ||| Sbjct 6487 AGCCAGCGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGA 6546 Query 27497 TGCCGGGAAAACACTTCAACCATGTACCGCACAAACTCCGACGCACGCTCCTGGAACTCG 27556 || | | || ||||||||||||||| | || | | |||||||| ||||| Sbjct 6547 TGGTGAGCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCA 6606 Query 27557 ACATCGTCATCAAATGCACGGCTGATCGCCTTTTTGTTGGCGCCGTGGCGCGGTAACTCG 27616 ||||||||||||||||||||| | || || |||||| |||| ||| ||| |||| | Sbjct 6607 ACATCGTCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGA 6666 Query 27617 TCCATACACAGCGACTCCAGCATGTGAAGCGACAGTCCTTTCTCCAGGTCGTCAGCCAGT 27676 || || || ||||| || | || || | | ||| ||||| |||| |||||| |||||| Sbjct 6667 TCGATGCAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGT 6726 Query 27677 TCGGACTCTTTCTCTTCTCTGGCGATTTGCTGGTAATGCCGGGTCCAGTTCTGAGCCTCG 27736 || | |||||||||||| | |||||| |||||||| || || | |||| |||||||||| Sbjct 6727 TCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCA 6786 Query 27737 ATCCGGTCGTAAGTGAGATATGCGTTCATGGCTGAACTCCTGAATTTTG-TTTGCAGA-A 27794 | || || | | || ||| ||||||||||||||||||||||| | | | || | | | Sbjct 6787 AGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAAAATA 6846 Query 27795 TCCCCTGCGCGATGAAAGCC-GCCTGATAGCTCAGTTAAATTCTTTGTTTCTATTACCGG 27853 || || ||||| || ||| | |||| | || ||| ||| | Sbjct 6847 TCGCC--CGCGA--AATGCCAGGCTGA----TTAGGAAAACAAGAAAGGGGGGTTAGTGA 6898 Query 27854 CTGAGGCCTTGGCCAAACCCGTTCAAATAGACTTCAACCAGCAAATCGGTTGTGTAAGTG 27913 | ||||| | || |||| | | | ||||| || |||||||| || |||||| Sbjct 6899 TTCAGGCCGTTACCGCGTCCGTCGAGAAAAACTTCCACGAGCAAATCACGGGTATAAGTG 6958 Query 27914 CGCTCAATGCCGCGATGCAGGTAGAGGCGACCGCGTTTGTTTGCTGATGCAGTCCAGGTG 27973 ||||| |||||||||||||| || || || |||||| || ||||||||||||||||| Sbjct 6959 CGCTCGATGCCGCGATGCAGATAAAGCCGTCCGCGTAAATTAGCTGATGCAGTCCAGGTA 7018 Query 27974 CCTTCACGATGCTTTACGAGCATTCCGGGCATAACGGCACCGCGGTTAACGGTCTGGGTT 28033 || || || || || |||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 7019 CCATCTTTGTGTTTGACCAGCATTCCTGGCATGACCGCACCTCGATTAACGGTCTGCGTT 7078 Query 28034 CCATAGTGATGACTAATCAT 28053 || || || ||| || ||| Sbjct 7079 CCGTAATGTTGATGAACCAT 7098 Score = 919 bits (1018), Expect = 0.0 Identities = 898/1156 (78%), Gaps = 6/1156 (1%) Strand=Plus/Plus Query 30921 CACAAAAGACAAACTAACAAAAGACAATATTAAAAGATCTACGTCCGAGAATTCTGACGA 30980 |||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| Sbjct 10598 CACAAAAGACAAACTAACAAAAGACAATATAAAACCTTTTTCGTCCGAGAATTCTGACGA 10657 Query 30981 ATCCTCTGACAAGCCAAGAAAGAAACCTCATGTTCTAAAACCCGAAGCAGCGATTCAGAG 31040 |||||||||| ||||| ||| | | || ||| | ||||| || || || |||||||| Sbjct 10658 ATCCTCTGACCAGCCAGAAAACGATCTTCCTGTGATGAAACCGGATGCTGCAATTCAGAG 10717 Query 31041 AGGCAACAAGTGGGGAACTGCTGAAGACCTAACTGCTGCCGAGTGGATGTTTGACCTGAT 31100 |||| ||||||||| || || |||||||| || || || ||||||||||||||| || | Sbjct 10718 CGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACATGGT 10777 Query 31101 AAAAACCATTTCTCCATCAGCCAGAAAACCTAACCTGGCAGGATGGGCTAACGATATACG 31160 || ||||| | ||||||||||||||||| || | ||||| |||||||||||||| || Sbjct 10778 GAAGACCATCGCGCCATCAGCCAGAAAACCGAATTTTGCAGGGTGGGCTAACGATATCCG 10837 Query 31161 CCTGATGCGTGAATGTGACGGACGAACACATCGCGACATGTGCGTGCTGTTTCGCTGGGC 31220 ||||||||||||| |||| ||||| | || |||||||||||||||||||| |||||||| Sbjct 10838 CCTGATGCGTGAACGTGATGGACGTAACCACCGCGACATGTGCGTGCTGTTCCGCTGGGC 10897 Query 31221 GTGCCATGACAGCTTCTGGGCTGGCAACGTCATTAGCCCGGCAAAGCTCCGCGAAAAGTG 31280 ||||| |||| ||||||| | || ||||| | || ||||| || |||||||| ||||| Sbjct 10898 ATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGTCCGGCTAAACTCCGCGACAAGTG 10957 Query 31281 GACTCAACTCGATATCAACCGCAACAAGCAACAGACTGGCACAACTGCCTCTAAGTCAAA 31340 ||| || ||||| |||||||| |||||||||||| ||||| || ||| || |||| Sbjct 10958 GACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCTGGCGTGACAGCCAGAAAACCAAA 11017 Query 31341 ACTTGACCTGAATAACACTGACTGGATATACGGAGTGGAGCTATGAAAAACATTGCTGCG 31400 ||| ||||||| |||||||||||||| ||||| ||||| |||||||||||| || || Sbjct 11018 ACTCGACCTGACAAACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCA 11077 Query 31401 CAGATGGTTAATTTTGACCGTGAGCAGATGCGCCGTATTGCCAACAACATGCCGGAACAG 31460 ||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 11078 CAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAG 11137 Query 31461 CATAACGATAAGCCGCAAGTTGAGCAGGTTGCTAAGGTCATCAACAACGTGTTTAGTCAG 31520 | |||| |||||||| || | ||||| || || |||||||| ||||| || ||| Sbjct 11138 TACGACGAAAAGCCGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAG 11197 Query 31521 CTTATGGCAGCGTTCCCTGCTACCACAGCTAATCGCAGCCAGGCTGAGATGAACGAAATC 31580 | ||||| | ||||| || | | ||||| || |||| ||| ||||||||||| Sbjct 11198 TTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAAATC 11257 Query 31581 CGGCGTCAGTGGGTTCTGGCTTTCCGTGAGAACGACATCACCACCATGGAGCAAGTTGCG 31640 || || |||||||||||||||||||| || |||| |||||||| ||||| || ||| Sbjct 11258 CGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAAC 11317 Query 31641 GCCGGAATGCGTGTCGCCCGCCGTCAGGAACGTCCGTTTCTTCCGTCTCCAGGCCAGTTT 31700 || |||||||| || ||||| || ||| | || || || || || || || || |||||| Sbjct 11318 GCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTT 11377 Query 31701 GTCGCATGGTGTAAGGCTGAATTGGCAACTGCT---GCCGGGCTTCCTGATGCCAATGAA 31757 ||||| ||||| || ||| ||| | | | |||||||| || | | || || Sbjct 11378 GTCGCCTGGTGCCGGGAAGAA---GCATCCGTTAACGCCGGGCTGCCAAACGTCAGCGAG 11434 Query 31758 CTGGTCGATATGGTTTACCAGTATTGCCGCACGCGTGGTTTATACCCGGATGCAGAATCA 31817 ||||| |||||||||||| |||||||||| | |||||| | || ||||||||||| || Sbjct 11435 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCT 11494 Query 31818 TATCCATGGGAATCCAAAGCCCATTACTGGCTTGTCACCACACTGTACTCAAACATGCGA 31877 ||||| ||| |||| || || ||||||||||| || |||| |||||| |||||||| Sbjct 11495 TATCCGTGGAAATCGAACGCGCATTACTGGCTGGTTACCAACCTGTACCAGAACATGCGG 11554 Query 31878 GCTAACGCTCTTAGTGATACCGAGTTGCGCCGCAAGGCAGTCGAAGAACTCAACCACATG 31937 || || || |||| |||| | || || || |||||||| | ||| ||||| | ||| Sbjct 11555 GCCAATGCGCTTACTGATGCGGAATTACGGCGCAAGGCTGCCGATGAACTGTCCTGTATG 11614 Query 31938 GTTACCAGGATAAACCGTGGAGAGGTGATCCCGGAGCCAGTTAAGCAGCTTCCTGTTCTT 31997 | | || |||||||| |||| ||| || || ||||| || ||||||||||| | Sbjct 11615 ACCGCGCGAATTAACCGTGGTGAGGCGATACCTGAACCAGTAAAACAGCTTCCTGTCATG 11674 Query 31998 GGTGGCAGACCACTAAACCGCGCGCAAAACCTCGCGAAGATTGCAGAAATTCGGGCCAAA 32057 || || ||||| ||||| || || || || |||||||| |||||||| || || Sbjct 11675 GGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAAG 11734 Query 32058 TTCGGACTAAAGGGAG 32073 || || || || |||| Sbjct 11735 TTTGGGCTGAAAGGAG 11750 Score = 158 bits (174), Expect = 3e-34 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 30472 GGAGTAATTATGGCAAACACTGCCGAAGTAATCAATTTTCCTGTGCCTGACGTGGCACCT 30531 |||| |||||||||||||||||| || || |||||||||| ||||| || ||||||| Sbjct 10125 GGAGGAATTATGGCAAACACTGCTGAGATATTCAATTTTCCAGTGCCGGATGTGGCACAA 10184 Query 30532 AAGGAGCCGCGCGTGGCAGATCTCGATGATGGCTATACGCGCCTGGCAAATGAACTTCTG 30591 ||||||| |||||||||||||||||| ||||| ||||||||| | |||||||| | ||| Sbjct 10185 AAGGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTG 10244 Query 30592 GATGCCGTGATGTGTTCTGGTTTGCCGGAGACTGAGCTGTGCATCCTGATGGCCGTATGG 30651 || || |||||| | || || | || |||| || | |||| || | Sbjct 10245 GAAGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATG 10304 Query 30652 CGCAAAACGTATGGATACAACAAGAAAATGGACTGGATCAGCAACGAGCA 30701 |||||||| ||||| | || || | | |||| ||| | ||||||||||| Sbjct 10305 CGCAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCA 10354 >seq1687 Length=800 Score = 127 bits (140), Expect = 5e-25 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 39837 AATCACTACCGCAATAACGCTATCACTTACAAGGACCAGCGCGACACCGCTACCCACAAG 39896 ||||| ||||| ||||||| || || ||||| | ||||||||||| | || | Sbjct 541 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 600 Query 39897 CTGACACTGGCGAACGCGACAATTACCGACATGACGAAGCGCCAGCGTGACATTGCCGCC 39956 |||| |||||||||||| ||||||| |||||| || |||||||||||| |||| || Sbjct 601 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 660 Query 39957 CTCGATGCAAAATACACGAAGGAACTAGCTGATGC 39991 || |||| ||||||||||||||| ||||| |||| Sbjct 661 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGC 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130202741976548