Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq345 145 3e-30 seq5886 84.2 8e-12 >seq345 Length=175672 Score = 145 bits (160), Expect = 3e-30 Identities = 322/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | |||| ||||||| ||| ||||||||||| ||| | || || Sbjct 165530 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 165589 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || || |||||| || || || | ||||||||||| | ||||||||||||| | Sbjct 165590 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 165649 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 || | ||| ||||||||| | || || | || ||||| || | ||| |||||||| Sbjct 165650 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 165709 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCT- 32917 ||||| ||||||||||||||| | || | | | ||| ||||| || ||| | Sbjct 165710 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGGACGTGAATTC 165769 Query 32918 GTCCCTGGGTCG-CTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGACT 32976 | | ||| || | ||| | | | |||| | || | || | || || Sbjct 165770 GGCTATGG--CGATTTCGGTGCGGCCAAGGTCATCTCCAAGAACGAGGTGACGCAGGATC 165827 Query 32977 GGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACC 33036 |||| || ||||| ||| | ||||| || | |||| ||||||||| ||| || | Sbjct 165828 TGGTGCTCGGCGCCGATCAGGTGCTGGTGGGTACGAACCGCACCCGCCGCCGCTATAATC 165887 Query 33037 GCCGCATCCGCGAGCTCCGAGG---AGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093 ||| | ||||||||| ||| ||||| | | ||||| ||| ||||||| Sbjct 165888 AGCGCCTGCGCGAGCTCAAAGGTTTTTCCGCT---TCCTTTCCGCAGGCGGGCGACAAGC 165944 Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGT 33151 |||| |||||||| ||| | | | | || ||||| ||||||||||| |||| ||| Sbjct 165945 TGGTGTGCCTGCGCAACGATCCGGCCAAGGGGCTGCTCAACGGCTCGCTGTGGAAGGT 166002 >seq5886 Length=7538 Score = 84.2 bits (92), Expect = 8e-12 Identities = 216/323 (67%), Gaps = 16/323 (5%) Strand=Plus/Plus Query 5848 GCAGGGACGGGGAAGACCTTCCTGGCCAT--CCACCACGGCCTGCGCCTGCTGGAGGCCG 5905 || || || || ||||||| ||||||| | || | ||| | ||| |||||| || Sbjct 2 GCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGCGCGGTCGATGCC--CTGGAGCGCG 59 Query 5906 GGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCT 5965 | || | | ||| || | | || || || || || || | |||||||| |||| Sbjct 60 AGCAGGTGCGACGCATCCTGCTGGTGCGTCCGGCGGTGGAAGCCGGCGAGAAGCTGGGCT 119 Query 5966 TCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGG 6025 | |||||||| ||| | ||||||| | || ||||| |||| | |||||| Sbjct 120 TTTTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGCTCTACGACGCGC 179 Query 6026 TGATCGACCTGGTCGGCC-CGACGA--TGACGAAGCGCCTCCTCGAGTCGCGCCAGCTG- 6081 | ||| || ||||| ||| | || | |||| | ||||| |||||| || Sbjct 180 TCTACGAGATGCTCGGCTTCGAATACGTGGCCAAGC---TGATCGAG---CGCCAGGTGA 233 Query 6082 --GAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCG 6139 ||| |||||||||||||||||||||| ||||| ||| | ||| ||| | |||| | Sbjct 234 TCGAGATCGCCCCGCTGGCCTACATGCGTGGCCGTACGCTGAACAACAGCTTCATCATTC 293 Query 6140 CTGACGAGATGCAGAACGCCACC 6162 ||||| | |||||| ||||| Sbjct 294 TCGACGAAAGCCAGAACACCACC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191423814060160