Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq3869 168 8e-37 seq2516 125 8e-24 seq2261 100 3e-16 >seq3869 Length=8584 Score = 168 bits (186), Expect = 8e-37 Identities = 284/411 (69%), Gaps = 0/411 (0%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTA 18367 |||| || || || ||| | ||||| || ||||||||||| |||||| ||| || Sbjct 4762 TGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGC 4703 Query 18368 AGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATT 18427 ||| || ||| |||||||| || || || |||| | || ||| | || || | Sbjct 4702 TGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCCACCTCCAGCGCGATTGTGAAAT 4643 Query 18428 ATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 | || | ||||| || ||||| || ||||| || || ||||| ||| || || | Sbjct 4642 ACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTGGGCAGCC 4583 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 | ||| || |||| | ||||| || ||||| |||| || |||||||||| Sbjct 4582 CGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTACAAGCATTTCCAGA 4523 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | || || ||||| || || || ||||| || || || || |||||||| || | || | Sbjct 4522 CCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTCTTCTACC 4463 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATG 18667 | ||||||||||| ||| | |||| ||| | || |||||||| ||| ||| || | Sbjct 4462 CAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGTACCGACG 4403 Query 18668 AAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718 |||||| ||||||| | || || || |||| ||||| || ||||||| Sbjct 4402 CCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTGATGT 4352 Score = 140 bits (154), Expect = 4e-28 Identities = 508/781 (65%), Gaps = 27/781 (3%) Strand=Plus/Minus Query 20032 TGCAACCTATGTTTTTCGGTGATGAACCTGGTA---TTGCGCGTTACGATACCCAGAAAC 20088 || ||||||||||||| || | || | || | || || |||||| || ||| Sbjct 2951 TGGAACCTATGTTTTTTGGCCAG---CCGGTTAACGTGGCCCGCTACGATCAGCAAAAAT 2895 Query 20089 ATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCTGAAGAGG 20148 | || || || ||||| | |||||||||||| | ||||||||||| || ||||||| Sbjct 2894 ACGACATCTTTGAAAAGCTGATTGAAAAGCAGCTCTCCTTCTTCTGGCGCCCGGAAGAGG 2835 Query 20149 TTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAACATATCT 20208 ||||||| | || ||| ||||| || | | || ||||||||||||||||| | Sbjct 2834 TTGACGTTTCCCGCGATCGCATCGACTACCAGGCGCTGCCGGAACATGAAAAACATATTT 2775 Query 20209 TTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCTCCTAACA 20268 | | ||| ||||||| |||| | ||||| || | ||||| ||| || || Sbjct 2774 TCATCAGCAACCTGAAGTACCAGACGCTGCTCGACTCCATCCAGGGCCGTAGCCCGAATG 2715 Query 20269 CTGCTTTTATGTCCATCGTATCTGATGTAACA-CTTGACACATGGATTCCTACCTGGGCG 20327 || || || | | | || || | || || || ||| | |||||||| Sbjct 2714 TGGCGTTGCTGCCGCTGATCTCC-ATCCCGGAGCTGGAGACCTGGGTAGAAACCTGGGCC 2656 Query 20328 TTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTACGAAGAT 20387 ||||| ||||| || ||| ||||| || || ||||| || |||||| | | | || Sbjct 2655 TTCTCCGAGACCATTCACTCGCGTTCGTACACTCACATCATCCGCAACATCGTCAACGAC 2596 Query 20388 CCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTGCA-ATCATGAAGCGTGCTGATGC 20446 ||| | | | || ||||| ||||| | | ||| ||| ||| ||||| || | Sbjct 2595 CCGGCGACCGTGTTCGACGACATCGT-CACCAACGAGCAGATCCAGAAACGTGCGGAAGG 2537 Query 20447 TGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCATCATTTCTGTAA 20506 | | | ||||||||| ||||| | ||||| | | |||| | ||| Sbjct 2536 CATCTCTCACTATTACGATTCGCTGATCGAAATGACCAGCTACTGGCATC--TGCTGGGC 2479 Query 20507 TAACTTTACAGCAGAGACGGAAGTTAATG--AAAATTATAAACGTTTGATGTTGCGAGAT 20564 || || | | || | | || | |||| | | ||| || |||| || Sbjct 2478 GAAGG---CACCC-ACACCG---TCAACGGCAAAACCGTGACCGT--GAATCTGCGCGAG 2428 Query 20565 ATTAAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAGCAATTCGTTTC 20624 | ||||||||||| |||||||| || |||||| || |||||||| || || ||| Sbjct 2427 CTGAAAAAGAAACTCTATCTGTGCCTGATGAGCGTTAATGCCCTGGAAGCGATCCGCTTC 2368 Query 20625 TATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATGGAAGGCAGTGCT 20684 || || || || ||| |||| || ||||| ||| || |||||||||| || Sbjct 2367 TACGTCAGCTTCGCCTGCTCCTTCGCCTTTGCCGAACGCAAACTGATGGAAGGCAACGCC 2308 Query 20685 AAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGCACACAATATATG 20744 |||||||| || ||||| || || |||||| |||||| ||| ||||| || ||||| Sbjct 2307 AAAATTATCCGCCTGATCGCCCGCGATGAAGCGCTGCACCTGACCGGCACCCAGCATATG 2248 Query 20745 CTG--CGTATTTGGCAGCAAGGTAAAGATGATCCTGAAATGATCGAAATTGCCAAAGAGT 20802 ||| | | | || | || | || ||||| |||||| ||||| ||| |||||| Sbjct 2247 CTGAACCTGCTGCGCTCC--GGCAGCGACGATCCGGAAATGGCGGAAATCGCCGAAGAGT 2190 Query 20803 G 20803 | Sbjct 2189 G 2189 >seq2516 Length=21774 Score = 125 bits (138), Expect = 8e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 125471 CCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACG 125530 |||||||| ||| | |||||||||||||| || || || || || ||| ||| ||||| Sbjct 1764 CCGGAAGTGCGCGTCGAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACC 1823 Query 125531 CTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGT 125590 || | || || || | ||||| ||||||||||| || ||||||||||||||||| || Sbjct 1824 CTGCTGGACGCGGTTGAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGC 1883 Query 125591 TATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACG 125650 || || || || || || | |||| | ||||||||| ||||| ||| || || Sbjct 1884 TACGCGGTACGCTTCAACTCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACC 1943 Query 125651 TTTACGGAA 125659 ||||| ||| Sbjct 1944 TTTACCGAA 1952 >seq2261 Length=3986 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 125482 CATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGC 125541 ||| ||||| |||||||| || || || || || |||| || |||| ||| | || || Sbjct 501 CATCGAAGGTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGC 560 Query 125542 AGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCG 125601 | || | || ||||||||||| || |||||||| ||||| ||||| || || || || Sbjct 561 GATGGAAAACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACG 620 Query 125602 TTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAGC 125661 |||||| | |||| ||||||||| ||| ||||| | || || || || | | Sbjct 621 TTTTAACTCCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCACTCAGAC 680 Query 125662 TATGTAAT 125669 ||||||| Sbjct 681 CATGTAAT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582530388886600