Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq2516 214 2e-50 seq2261 140 3e-28 >seq2516 Length=21774 Score = 214 bits (236), Expect = 2e-50 Identities = 157/183 (86%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 ||||| ||||| ||||||||||||||||| ||||||| ||||| ||| || || ||| Sbjct 1779 GAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCGGTT 1838 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 ||||||||||||||||||||||||||||||| ||||| ||||| || || || ||||| Sbjct 1839 GAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGCTTC 1898 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| || || Sbjct 1899 AACTCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGCCTG 1958 Query 102099 TAA 102101 ||| Sbjct 1959 TAA 1961 >seq2261 Length=3986 Score = 140 bits (154), Expect = 3e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 || ||||||||||| ||||||||||| ||||| || || |||| ||| || || Sbjct 502 ATCGAAGGTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGCG 561 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | | ||||||||||||||||||||||||||||||||||| || || || || || Sbjct 562 ATGGAAAACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACGT 621 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGT 102095 |||||||| ||||| |||||||||| || ||||| | ||||||||||| ||| Sbjct 622 TTTAACTCCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCACTCAGACC 681 Query 102096 TTGTAAT 102102 |||||| Sbjct 682 ATGTAAT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534480148797280