Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq501 100 3e-16 seq3869 86.0 6e-12 >seq501 Length=12468 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 67175 ATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTA 67234 |||||||||||| | ||||| ||||||||| |||||| ||||||||||||| |||||||| Sbjct 4859 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 4800 Query 67235 TCCATCTGAGCTAAAGGGCC 67254 ||| ||||||||| ||||| Sbjct 4799 ACCA-CTGAGCTAAGGGGCC 4781 >seq3869 Length=8584 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140121 AGGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAAT 140180 ||||||||||| || || | || || | |||||| ||| || | ||| || Sbjct 4308 AGGGCTGAACAGGGTAATATCGCCGCCCTTCAGCAGACGGGTGTACATCAGCTTGTTGAT 4367 Query 140181 TTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAG 140240 || || || || || | ||| |||| ||||| | || ||| ||||| ||||| Sbjct 4368 CTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAG 4427 Query 140241 TACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACC 140300 || |||||| |||| ||||| |||||||| || || ||| | | || || ||||| || Sbjct 4428 CACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCGCCGCC 4487 Query 140301 GCGAATGCCGCCTTGAGAACAAGATTTAAC 140330 ||| | |||||| || || || ||||| || Sbjct 4488 GCGCACGCCGCCCTGCGAGCAGGATTTCAC 4517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518412220166120