Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq26023 277 6e-70 seq25528 214 6e-51 seq10590 154 5e-33 seq85 147 7e-31 seq18063 96.9 1e-15 seq4408 80.6 9e-11 >seq26023 Length=543 Score = 277 bits (306), Expect = 6e-70 Identities = 385/537 (72%), Gaps = 2/537 (0%) Strand=Plus/Minus Query 39668 ATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCAC 39727 ||||||||||||||||| || || |||||||||||||||| | || | | ||||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 39728 TGGGGGTAGTCCCACTGCGTGACGGTGACGCCGTCC-GCAGGACGGACCCACACCGGAAG 39786 |||||||| ||||||||||| | |||||| || | ||| | | ||||| Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGCTCG-CGGCGCATGATCGGAAT 418 Query 39787 GTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCG 39846 | |||| || || ||| ||||||||||| ||||| |||||||||||| |||||| Sbjct 417 GATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCG 358 Query 39847 AACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTC 39906 ||| |||||||| || ||||| ||||| ||| ||||| || || |||| Sbjct 357 CTTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTC 298 Query 39907 GTACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCC 39966 | |||| || || ||||| ||| || | ||| | |||||| | | || ||| || || Sbjct 297 GATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCC 238 Query 39967 CTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40026 || |||||||| | ||||||||| | ||| ||||||||| || ||| || Sbjct 237 GTCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCCC 178 Query 40027 GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGAT 40086 | ||| || | | ||||| || | |||||||||| ||| | | |||||| Sbjct 177 CATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGAT 118 Query 40087 CCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCG 40146 | ||| | || ||||||| ||||| |||| ||||||||||| |||||||| Sbjct 117 CGTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGTC 58 Query 40147 GATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACAC 40203 ||||||||||||||| ||||||||||||||||||| ||| | |||||||||||| || Sbjct 57 GATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq25528 Length=831 Score = 214 bits (236), Expect = 6e-51 Identities = 441/639 (69%), Gaps = 24/639 (4%) Strand=Plus/Minus Query 40639 CATCTCGGCGGCCGTCTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTT 40698 ||||||||| || |||||||||||||||||| ||| |||||| ||| |||||||||| Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 40699 GTCGAGCGTGGTGCCGGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGT-CGG 40757 ||| | ||| | || | ||| ||||| || || || |||||||| | | ||||| | | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 516 Query 40758 CCGTGACGTAGTGGCTGTCGTTGGT---GACCACCGGGGTGAGCGCGAGGTGCTTGCCCA 40814 | | |||||| ||||||||| ||||| |||| || | |||| ||| | Sbjct 515 ATGCG-TGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTC---AGGTCCTTCGAGA 460 Query 40815 GCCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCA 40874 | ||| ||| ||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 459 GACGGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGG 400 Query 40875 GGAAGTACCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGT 40934 |||||| || ||||||| ||| || || | | || |||| || || Sbjct 399 CGAAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGT 340 Query 40935 CGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGA 40994 ||||||| ||||| || || ||| |||| | || ||||| || ||||| ||| Sbjct 339 CGTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGA 280 Query 40995 TCAGGCCCTCGTTGT-GCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AG 41052 |||| || | | | | || || | || ||| |||||||||||| ||| | || Sbjct 279 TCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAG 224 Query 41053 CAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTT 41112 | ||||| | |||||| ||||||||| | |||||||||| ||| || || Sbjct 223 TA-ACCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCC-CTC-GGTG 167 Query 41113 CTCGG---CGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCTT 41169 ||| | | | || || | |||||||||||||||| ||| ||||||| | ||| Sbjct 166 CTCTGACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTT 108 Query 41170 CTGGTCCTCGGTGCCCCACTGCACCCGC-TCCTG--ATCGAAGCGCGAGCCCGGAGCCAT 41226 ||| || | |||||||||||| ||| || || | | | ||| ||| |||| | Sbjct 107 CTGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGAC 48 Query 41227 GTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGC 41265 || ||||||| ||||||||||||||||| || ||||| Sbjct 47 ATAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGC 9 >seq10590 Length=4137 Score = 154 bits (170), Expect = 5e-33 Identities = 202/278 (73%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCG 40180 |||||| ||||||| |||||| || ||| | |||||| || || ||||||| Sbjct 2673 CCCGTATTTCTCGGCCACGTACTCAATAACCCGGTCGCGACCATCCATGCA--GAAGTCG 2616 Query 40181 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40240 | ||| | ||||||||| || || || || ||||| ||||| || ||||| | || || Sbjct 2615 ACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAGCAGGTCG 2556 Query 40241 TGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCC 40300 |||||| || || || ||||||||| || |||||| |||||||||||||| | Sbjct 2555 AACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACCGGCGCCG 2496 Query 40301 GAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40360 || || || || || || ||| ||||||||| ||||| | ||| ||| || || Sbjct 2495 GAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAACTCCATC 2436 Query 40361 ACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 || | |||||||||| |||||| ||||||||| |||| Sbjct 2435 ACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 >seq85 Length=367292 Score = 147 bits (162), Expect = 7e-31 Identities = 262/380 (69%), Gaps = 2/380 (1%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGA 40094 ||||| | || ||||||||| | |||| || | || |||||||| | | |||| Sbjct 9189 AGGGCATTTCGAGCACGCGGCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCGA 9248 Query 40095 AGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCT 40154 |||| |||||| || |||| ||| || ||||| | || || |||||||||| Sbjct 9249 AGGTGATGATCTGCGCCACCTGATCGCGGCCATACTTGGCCTGAACATAGCGGATGACCT 9308 Query 40155 CGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 || |||| ||| | | |||||| ||||||| ||||||||| || ||||| ||||| | Sbjct 9309 CGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGGAT 9368 Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-G 40273 | ||||| || ||||| | || | ||| ||||||| |||||||||| || | Sbjct 9369 TGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAGCG 9428 Query 40274 CAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTC 40333 || ||||| || |||||||| || | ||||| || || |||||||| | | | Sbjct 9429 CA-TAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATGG 9487 Query 40334 TCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGG 40393 | || ||||| ||| ||||||| |||| |||||||| ||| | |||| || Sbjct 9488 GCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCGG 9547 Query 40394 ATGATCATGTCGATCTCGTA 40413 |||| ||| ||||| || Sbjct 9548 GTGATGATGGAAATCTCATA 9567 >seq18063 Length=485 Score = 96.9 bits (106), Expect = 1e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40244 TCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303 ||||| || ||||||||||||||| | ||||| |||||||| ||||| |||| Sbjct 26 TCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCCGAT 85 Query 40304 CCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40363 || || || || || || ||||||||| |||||||| ||| ||||| ||| Sbjct 86 CCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATTACG 145 Query 40364 ACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 | ||||||||| ||||| ||||||||||| || || || | |||| Sbjct 146 ATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 193 >seq4408 Length=2107 Score = 80.6 bits (88), Expect = 9e-11 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 39023 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGC 39082 |||||||| |||||||||||||||||| ||| || || ||| |||||| || | | Sbjct 1854 GCCGCCATAAACTCGGCCGGGTAGTGCGCCTTAAGCCACAGCGTCTGGTAGGAGACCAAC 1913 Query 39083 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAA 39126 |||| || || ||||||| ||||| || |||| |||||||| Sbjct 1914 GCGTAGGCGGCGGAGTGCGATTTGTTAAATCCGTAACCGGCGAA 1957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160352632476498