Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq26023 311 3e-80 seq25528 260 4e-65 seq10590 131 5e-26 >seq26023 Length=543 Score = 311 bits (344), Expect = 3e-80 Identities = 394/538 (73%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 38575 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAG 38634 ||||||||||||||||||||||| |||||||||||||| | ||| || |||| |||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 38635 CTCGGGTAGTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCACCCACG-TAGGGA 38692 |||||||||||||||||||| || |||||| || || || | | | | || | Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGCTCGCGGCGC--ATGATCGGAA 419 Query 38693 TGTGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCC 38752 || ||||| ||||| ||| ||||||||||| ||||| |||||||||||| ||| | Sbjct 418 TGATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGC 359 Query 38753 GGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCT 38812 | || |||||||| || ||||| |||||| |||| |||||| || || ||| Sbjct 358 GCTTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCT 299 Query 38813 CGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGC 38872 || ||| | || || ||||| ||| || | ||| | |||||| | | || | |||| Sbjct 298 CGATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGC 239 Query 38873 CCTCCAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGC 38932 | || |||||||| | |||||||||| | ||| ||||||||| || ||| | Sbjct 238 CGTCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCC 179 Query 38933 CGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGA 38992 | | ||| || | | ||||| || | |||||||||| ||| | | ||||| Sbjct 178 CCATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGA 119 Query 38993 TCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACC 39052 || ||||||||| ||||||| ||||| || ||||||||||| |||||||| Sbjct 118 TCGTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGT 59 Query 39053 GGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGAC 39110 ||| || ||||| ||||| |||||||||||||||| ||| | ||||||||||||||| Sbjct 58 CGATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq25528 Length=831 Score = 260 bits (288), Expect = 4e-65 Identities = 443/633 (70%), Gaps = 12/633 (2%) Strand=Plus/Minus Query 39546 CATCTCGGCGGCCGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCGATCCTCCTG 39605 ||||||||| || | ||| | ||||||||| ||||| |||||| |||||| | | | Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 39606 GTAGAGGGTCGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 39665 || | ||||| || | ||| |||||||| || || ||||| || | ||||| | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 516 Query 39666 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCG 39725 ||||||||||||||||||||||| | ||| | | || ||| || ||| || Sbjct 515 ATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGACG 456 Query 39726 GTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAA 39785 | ||| ||| ||||||||||||||| ||| ||||||||||||||||| ||| Sbjct 455 GAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGAA 396 Query 39786 GAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTA 39845 | |||| ||||| ||||| | ||| | ||| || || | ||| || | ||||| Sbjct 395 GTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGTA 336 Query 39846 CTGGCCGAGGTTGAGCCGGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAG 39905 ||| ||||| || || ||| | |||| |||||||| ||||| ||||||| Sbjct 335 CTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGATCAG 276 Query 39906 GCCCTCTGCGT-GCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGG 39963 || | | | | || | || ||||||| |||||||||||| ||| | || | Sbjct 275 TCCTTTGGAATAGGTCTG-CAGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGTA-A 221 Query 39964 CCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTG 40023 ||||| || ||| || ||| |||| |||||||||||||| ||| || || || Sbjct 220 CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC-TG 162 Query 40024 GC-GAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTGCTC 40082 | |||||||||||||||||| ||||| ||| ||||||| | |||||| || Sbjct 161 ACTCCACATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTGATC 102 Query 40083 GGGCGTGCCCCACTGGACCCGCTCCTGGTCGGAACGGTGC---CCCGGTGCGACGTACGC 40139 ||||| ||||||||| || ||| || ||| |||||| || || | ||| || || Sbjct 101 GGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACATAGGC 42 Query 40140 CTCGATCCCGATGATGGGCTTGACCCCAGCGGC 40172 ||||| ||||||||| |||||||| || ||||| Sbjct 41 CTCGAGCCCGATGATCGGCTTGACACCCGCGGC 9 >seq10590 Length=4137 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 2622 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2563 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || | ||||| || ||||||||| || ||||| || ||||||| || Sbjct 2562 CAGGTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACC 2503 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || ||||| || ||||| ||| ||||||||| ||||||| ||| ||| || Sbjct 2502 GGCGCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAA 2443 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39305 || || | |||||||| ||||||||||||||||||||| Sbjct 2442 CTCCATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159661664163714