Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq177 212 3e-50 seq47 194 8e-45 seq11306 174 8e-39 seq3571 150 9e-32 seq19644 136 2e-27 >seq177 Length=203703 Score = 212 bits (234), Expect = 3e-50 Identities = 420/619 (68%), Gaps = 7/619 (1%) Strand=Plus/Plus Query 66497 GCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCT 66556 ||||| ||| | || || |||| ||||| | || || || ||||| || ||| Sbjct 103585 GCCCTTGGCGTTGGCGGTCTGCCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGC 103644 Query 66557 TCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAAC 66616 || || ||| |||| ||| || || || | || | || |||||| || |||| | Sbjct 103645 TCGGGTAAGACAACCCTGGCGCTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATC 103704 Query 66617 GCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTG 66676 ||||| | ||||||| || || | |||||||| | || ||| ||| || ||| Sbjct 103705 TGCGCCTTCGTCGACGCGGAACATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTG 103764 Query 66677 GACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTT 66736 || || || || || || | ||||||||||| ||||||||||| ||||||||| Sbjct 103765 GATCTGGAGAATCTGCTGATCTCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACC 103824 Query 66737 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC--GTCGTTGACTCCGTGGCGGCCC 66794 ||| || || || | | || || || || || || || ||||| || || Sbjct 103825 GACACGCTGGTGCGTTCCG--GTGCGATCGATGTTCTGGTGGTCGATTCCGTTGCCGCTT 103882 Query 66795 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66854 || ||||| || || |||||||||| || || || || | ||||||||| || | Sbjct 103883 TGACCCCGCGTGCGGAAATCGAAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCC 103942 Query 66855 GCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGA 66914 |||| ||| ||||| |||||||||| || | |||| ||| | ||||| || Sbjct 103943 GCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGG 104002 Query 66915 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 66974 | | |||||||| | ||| ||||||||| |||| | ||| || ||| | Sbjct 104003 TCATTTTCATCAACCAGATCCGCATGAAGATCGG---CGTGATGTTCGGTTCGCCTGAAA 104059 Query 66975 CCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCA 67034 |||| |||||||| || || ||| ||||| || || || ||| | ||| |||| |||| Sbjct 104060 CCACGACGGGCGGCAATGCGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCA 104119 Query 67035 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCA 67094 ||| | ||||||| | || |||| |||||||||| ||||| || ||||| |||| Sbjct 104120 TCGGTGCGCTGAAGGAACGTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCA 104179 Query 67095 AGAACAAGCTGGCCCCGCC 67113 |||||||||| || || || Sbjct 104180 AGAACAAGCTTGCGCCCCC 104198 >seq47 Length=21181 Score = 194 bits (214), Expect = 8e-45 Identities = 447/665 (67%), Gaps = 19/665 (3%) Strand=Plus/Plus Query 66458 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTAC 66517 ||||| ||| |||||||||| | ||||||| ||| |||||| ||| || Sbjct 15584 GTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCTG 15643 Query 66518 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66577 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15644 CCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGACG 15703 Query 66578 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66637 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15704 CTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGAA 15763 Query 66638 CACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTGG 66695 || | ||||| |||| || || | || || || || || |||||||||| || Sbjct 15764 CATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG- 15820 Query 66696 TGGT-TCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCT 66754 || | |||||| || |||||||||||||| ||||||||| |||| || | ||| Sbjct 15821 TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTCT 15880 Query 66755 GGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 66814 || | | | | ||||||| |||||||| ||||| || |||| || || || Sbjct 15881 GGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAATC 15940 Query 66815 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATG 66874 |||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| ||| Sbjct 15941 GAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATG 16000 Query 66875 CGCAAGCTCACTGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGT 66932 || ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16001 CGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAGA 16058 Query 66933 TGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGAA 66989 | || ||| || ||| ||| | ||| |||| || ||||| || || || | Sbjct 16059 TCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGTA 16112 Query 66990 AGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGG 67049 | || ||| |||||||||||| || ||| |||| | || ||||||| | | | ||| | Sbjct 16113 ACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAAG 16172 Query 67050 AAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCC 67109 | ||||| | | ||||||| | ||||| || || || || || |||||| | ||| Sbjct 16173 AGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCCG 16232 Query 67110 CGCCG 67114 ||||| Sbjct 16233 CGCCG 16237 >seq11306 Length=553 Score = 174 bits (192), Expect = 8e-39 Identities = 233/322 (72%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 66939 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGA 66998 ||||||||||| | | || |||| || ||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 66999 GGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 67058 |||||||||||| ||||| ||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 67059 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 67118 | || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 67119 GCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 67178 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 67179 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCA---AGTACGGGG 67235 || | | ||| ||| | | | ||||||||||||||| | |||| || | |||| | Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACGACGGTG 257 Query 67236 ACAAGAACGTCGCCCAGGGCAA 67257 || ||| | | ||||||||| Sbjct 256 ACCAGA---TGGGCCAGGGCAA 238 >seq3571 Length=1035 Score = 150 bits (166), Expect = 9e-32 Identities = 323/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Plus Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66530 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 548 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 607 Query 66531 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66590 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 608 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 667 Query 66591 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 668 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 727 Query 66651 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGA 66708 |||| |||||| ||| ||| || || || | ||| |||| |||| || || || Sbjct 728 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 785 Query 66709 TACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66768 ||||| ||||| || ||||| ||| ||| | || || || || | | | Sbjct 786 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 845 Query 66769 CGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66828 |||| || ||||||||||| |||||||| || || || |||||||||| || || Sbjct 846 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 905 Query 66829 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || |||| || Sbjct 906 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 965 Query 66889 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66948 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 966 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 1025 Query 66949 C 66949 | Sbjct 1026 C 1026 >seq19644 Length=1527 Score = 136 bits (150), Expect = 2e-27 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 60229 CTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACC 60288 || || ||||||||||||||||| | ||| || |||| | | || || ||||||||| Sbjct 1174 CTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACC 1115 Query 60289 GTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTCGACGGCGAC 60342 ||| || | |||| || ||| | ||| | | | ||| |||||||| Sbjct 1114 ATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAGGACGGCGAT 1058 Query 60343 GCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCT 60401 || |||||||| |||| || |||||||||| ||||||| ||||||||| | Sbjct 1057 GCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTT 999 Query 60402 CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAA 60461 ||| ||| ||||||||||| ||| ||| || |||||||||| | || | Sbjct 998 GACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCG 939 Query 60462 GGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 60521 |||||| || ||||||||| |||||| ||||||| |||||||||||||| ||||| || Sbjct 938 CGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCG 879 Query 60522 GT 60523 || Sbjct 878 GT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242777251862418